Quantum Chemical Studies of Anti-Blood Cancer Agents, II

Three anti-blood cancer agents of the nitrogen mustard type, namely, cyclophosphamide, uramustine, and chlorambucil, were studied using quantum chemical computational methods. The first, approximate B3LYP method is suitable for rapid optimization of molecular geometry and vibrational analysis of small- or medium-sized molecules. It provides ground-state properties (dipole moment and polarizability, quadrupole moment, solvated volume and surface area, energy of zero-point vibration, entropic contribution, and NMR shielding constants) and global redox adiabatic properties (electron affinity, ionization energy, chemical hardness, molecular electronegativity, electrophilicity index, absolute reduction, and oxidation potentials). Calculations were performed in a solvent parametrized for water. The calculations were improved by using the DLPNO-CCSD-(T) - domain localized pair natural orbitals-coupled cluster singles + doubles + triples method. This post-Hartree-Fock method accounts for almost the full electron correlation energy. The calculated molecular descriptors were compared to those obtained for melphalan and bendamustine in their canonical and zwitterionic forms. Bulk molecular properties (dipole polarizability, quadrupole moment, solvated volume and surface area, zero-point vibration energy, and total entropic term) were found to correlate with molecular molar mass. The ionization energies of uramustine (120) and chlorambucil (116) are close to those calculated for melphalan (117) and bendamustine (112, 124); all data in kcal mol<sup>-1</sup>. The increased ionization energy for cyclophosphamide (141) causes the most negative absolute oxidation potential <i>E</i> <sub>ox</sub> <sup>ø</sup> (-6.1/-6.6 V) compared to bendamustine (-4.9/-5.1 V); the slash separates data obtained by the B3LYP and DLPNO-CCSD-(T) methods. The two-step electron-proton coupled transfer for chlorambucil (acid) occurs across the same energy barrier, but in the opposite order, so that "single electron transfer followed by proton transfer" (SET-PT) and "sequential proton loss electron transfer" (SPLET) mechanisms are equally probable.

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Publication Details

Journal
ACS Omega
Published
2025-05-16
DOI
https://doi.org/10.1021/acsomega.5c00740
Primary Topic
Free Radicals and Antioxidants
Type
article
Field-Weighted Citation Impact
0.00

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article

Quantum Chemical Studies of Anti-Blood Cancer Agents, II

Roman Boča, Cyril Rajnák, Miriam Ladická, Juraj Štofko
ACS Omega
Free Radicals and Antioxidants
article

Quantum Chemical Studies of Anti-Blood Cancer Agents, II

Roman Boča, Cyril Rajnák, Miriam Ladická, Juraj Štofko
article en

Abstract

Three anti-blood cancer agents of the nitrogen mustard type, namely, cyclophosphamide, uramustine, and chlorambucil, were studied using quantum chemical computational methods. The first, approximate B3LYP method is suitable for rapid optimization of molecular geometry and vibrational analysis of small- or medium-sized molecules. It provides ground-state properties (dipole moment and polarizability, quadrupole moment, solvated volume and surface area, energy of zero-point vibration, entropic contribution, and NMR shielding constants) and global redox adiabatic properties (electron affinity, ionization energy, chemical hardness, molecular electronegativity, electrophilicity index, absolute reduction, and oxidation potentials). Calculations were performed in a solvent parametrized for water. The calculations were improved by using the DLPNO-CCSD-(T) - domain localized pair natural orbitals-coupled cluster singles + doubles + triples method. This post-Hartree-Fock method accounts for almost the full electron correlation energy. The calculated molecular descriptors were compared to those obtained for melphalan and bendamustine in their canonical and zwitterionic forms. Bulk molecular properties (dipole polarizability, quadrupole moment, solvated volume and surface area, zero-point vibration energy, and total entropic term) were found to correlate with molecular molar mass. The ionization energies of uramustine (120) and chlorambucil (116) are close to those calculated for melphalan (117) and bendamustine (112, 124); all data in kcal mol<sup>-1</sup>. The increased ionization energy for cyclophosphamide (141) causes the most negative absolute oxidation potential <i>E</i> <sub>ox</sub> <sup>ø</sup> (-6.1/-6.6 V) compared to bendamustine (-4.9/-5.1 V); the slash separates data obtained by the B3LYP and DLPNO-CCSD-(T) methods. The two-step electron-proton coupled transfer for chlorambucil (acid) occurs across the same energy barrier, but in the opposite order, so that "single electron transfer followed by proton transfer" (SET-PT) and "sequential proton loss electron transfer" (SPLET) mechanisms are equally probable.

ACS OmegaVol. 10(21)
University of Ss. Cyril and Methodius in Trnava (SK)
Agentúra na Podporu Výskumu a Vývoja
Openalex Percentile: Top 92%
Free Radicals and Antioxidants
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