The Genus Petunia (Solanaceae): Evolutionary Synthesis and Taxonomic Review

Many plant groups exhibit complex evolutionary processes, including hybridization, incomplete lineage sorting, and variable evolutionary rates, which make species delimitation challenging. Molecular data have been essential for studying such groups, including <i>Petunia</i>, where local adaptation, allopatric speciation, pollinator interactions, and hybridization shape diversity and population structure. In this study, we produced the first broadly inclusive phylogenetic tree of <i>Petunia</i> using high-throughput DNA sequence data generated by genome complexity reduction-based sequencing (DArT), and incorporating all currently accepted taxa. Additionally, we reviewed previously published phylogenetic and phylogeographic studies on these species to support the taxonomic revision. Phylogenetic analyses based on SNPs were largely congruent, revealing two well-supported clades divided by corolla tube length, consistent with previous studies. These clades likely originated and diversified during the Pleistocene. The phylogenetic trees provided strong support for taxonomic changes, resolving long-standing uncertainties. We recognize <i>P. axillaris</i>, <i>P. parodii</i>, and <i>P. subandina</i> as independent species, elevate <i>P. integrifolia</i> subsp. <i>depauperata</i> to <i>P. dichotoma</i> Sendtn., and resurrect <i>P. guarapuavensis</i>. Additionally, our results highlighted unsolved questions regarding the evolutionary history of the short corolla tube clade, suggesting the need for further investigation into its diversification and genetic structure.