A phase-field model for solutions of DNA-made particles

We present a phase-field model based on the Cahn-Hilliard equation to investigate the properties of phase separation in DNA nanostar systems. Leveraging a realistic free-energy functional derived from Wertheim theory, our model captures the thermodynamic properties of self-assembling DNA nanostars under various conditions. This approach allows for the study of both one-component and multi-component systems, including mixtures of different nanostar species and cross-linkers. Through numerical simulations, we demonstrate the model's ability to replicate experimental observations, including liquid-liquid phase separation, surface tension variation, and the structural organization of multi-component systems. Our results highlight the versatility and predictive power of the Cahn-Hilliard framework, particularly for complex systems where detailed simulations are computationally prohibitive. This work provides a robust foundation for studying DNA-based materials and their potential applications in nanotechnology and biophysics, including liquid-liquid phase separation in cellular environments.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2025-05-15
DOI
https://doi.org/10.1063/5.0257265
Citations
4
Primary Topic
RNA Research and Splicing
Type
article
Field-Weighted Citation Impact
3.22

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article

A phase-field model for solutions of DNA-made particles

Lorenzo Rovigatti, Francesco Sciortino, Marco Cappa
4 citations
The Journal of Chemical Physics
RNA Research and Splicing
3.22
article

A phase-field model for solutions of DNA-made particles

Lorenzo Rovigatti, Francesco Sciortino, Marco Cappa
article en
4 citations

Abstract

We present a phase-field model based on the Cahn-Hilliard equation to investigate the properties of phase separation in DNA nanostar systems. Leveraging a realistic free-energy functional derived from Wertheim theory, our model captures the thermodynamic properties of self-assembling DNA nanostars under various conditions. This approach allows for the study of both one-component and multi-component systems, including mixtures of different nanostar species and cross-linkers. Through numerical simulations, we demonstrate the model's ability to replicate experimental observations, including liquid-liquid phase separation, surface tension variation, and the structural organization of multi-component systems. Our results highlight the versatility and predictive power of the Cahn-Hilliard framework, particularly for complex systems where detailed simulations are computationally prohibitive. This work provides a robust foundation for studying DNA-based materials and their potential applications in nanotechnology and biophysics, including liquid-liquid phase separation in cellular environments.

The Journal of Chemical PhysicsVol. 162(19)
Sapienza University of Rome (IT)
Ministero dell'Università e della Ricerca
Openalex Percentile: Top 8%
RNA Research and Splicing
3.22
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A phase-field model for solutions of DNA-made particles — Lorenzo Rovigatti, Francesco Sciortino, et al. · The Journal of Chemical Physics (2025) | TGRS Research Map | TGRS