Investigating the Genetic Links Between Immune Cell Profiles and Bladder Cancer: A Multidisciplinary Bioinformatics Approach

<b>Background</b>: Bladder cancer (BC) is a common malignancy in the urinary system, with an increasing incidence rate. Immune cell infiltration within the tumor microenvironment (TME) plays a crucial role in BC progression and treatment response. However, the immune cell composition of the TME presents a significant challenge to the effectiveness of current therapeutic strategies. <b>Methods</b>: We performed bidirectional Mendelian randomization (MR) analysis to investigate the impact of immune cells on BC risk. Single nucleotide polymorphisms (SNPs) related to immune cells were annotated, and candidate genes associated with BC risk were identified. Differential expression analysis identified immune-related differentially expressed genes (iDEGs), and a protein-protein interaction (PPI) network along with functional enrichment analysis were conducted to explore their roles in tumor development. Machine learning-based feature selection was applied to identify potential biomarkers and therapeutic targets. <b>Results</b>: MR analysis revealed eight immune cell subtypes significantly associated with BC. Using SNPs linked to these immune cells, 129 candidate genes were identified through the SNPense tool and cross-referenced with differentially expressed genes in BC, resulting in identification of 28 iDEGs. Machine learning identified five potential diagnostic biomarkers (<i>COLEC12</i>, <i>TMCC1</i>, <i>CEP55</i>, <i>KLK3</i>, <i>COL4A1</i>) with an AUC of 0.903, which are implicated in immune modulation and cancer progression. <b>Conclusions</b>: This study provides new insights into immune mechanisms in BC and identifies promising biomarkers for early diagnosis and therapeutic intervention.

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Publication Details

Journal
Biomedicines
Published
2025-05-15
DOI
https://doi.org/10.3390/biomedicines13051203
Primary Topic
Ferroptosis and cancer prognosis
Type
article
Field-Weighted Citation Impact
0.00

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article

Investigating the Genetic Links Between Immune Cell Profiles and Bladder Cancer: A Multidisciplinary Bioinformatics Approach

Jiali Jin, Dongwen Wang, Gaohaer Kadeerhan, Zhongji Jiang et al.
Biomedicines
Ferroptosis and cancer prognosis
article

Investigating the Genetic Links Between Immune Cell Profiles and Bladder Cancer: A Multidisciplinary Bioinformatics Approach

Jiali Jin, Dongwen Wang, Gaohaer Kadeerhan, Zhongji Jiang, Jin Zhang, Hong Yu Guo
article en

Abstract

<b>Background</b>: Bladder cancer (BC) is a common malignancy in the urinary system, with an increasing incidence rate. Immune cell infiltration within the tumor microenvironment (TME) plays a crucial role in BC progression and treatment response. However, the immune cell composition of the TME presents a significant challenge to the effectiveness of current therapeutic strategies. <b>Methods</b>: We performed bidirectional Mendelian randomization (MR) analysis to investigate the impact of immune cells on BC risk. Single nucleotide polymorphisms (SNPs) related to immune cells were annotated, and candidate genes associated with BC risk were identified. Differential expression analysis identified immune-related differentially expressed genes (iDEGs), and a protein-protein interaction (PPI) network along with functional enrichment analysis were conducted to explore their roles in tumor development. Machine learning-based feature selection was applied to identify potential biomarkers and therapeutic targets. <b>Results</b>: MR analysis revealed eight immune cell subtypes significantly associated with BC. Using SNPs linked to these immune cells, 129 candidate genes were identified through the SNPense tool and cross-referenced with differentially expressed genes in BC, resulting in identification of 28 iDEGs. Machine learning identified five potential diagnostic biomarkers (<i>COLEC12</i>, <i>TMCC1</i>, <i>CEP55</i>, <i>KLK3</i>, <i>COL4A1</i>) with an AUC of 0.903, which are implicated in immune modulation and cancer progression. <b>Conclusions</b>: This study provides new insights into immune mechanisms in BC and identifies promising biomarkers for early diagnosis and therapeutic intervention.

BiomedicinesVol. 13(5)
Shanxi Medical University (CN), Chinese Academy of Medical Sciences & Peking Union Medical College (CN), Southern University of Science and Technology (CN), First Hospital of Shanxi Medical University (CN)
Sanming Project of Medicine in Shenzhen
Openalex Percentile: Top 82%
Ferroptosis and cancer prognosis
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