Non-Catalytic Domains of Glycoside Hydrolase Family 5 from <i>Paenibacillus curdlanolyticus</i> are Important for Promoting Multifunctional Enzyme Activities and Degradation of Agricultural Residues
<i>Pc</i>GH5 from <i>Paenibacillus curdlanolyticus</i> strain B-6 is a modular protein consisting of a catalytic domain of glycoside hydrolase family 5 (GH5), and three non-catalytic domains (a family 11 carbohydrate-binding module (CBM11), a fibronectin type 3 (Fn3), and a family 3 carbohydrate-binding module (CBM3). In this study, the recombinants full-length <i>Pc</i>GH5 and the catalytic domain (<i>Pc</i>GH5_CD) were expressed in <i>Escherichia coli</i> and purified. Most GH5 members exhibit endo-cellulase activity. However, the catalytic domain enzyme of strain B-6 exhibited unique properties, showing multifunctional enzyme activities of endo-cellulase, endo-xylanase, endo-mannanase, and endo-1,3-1,4-β-glucanase. The sequence alignment of <i>Pc</i>GH5_CD compared to other characterized GH5 enzymes suggests that the two catalytic residues and the six substrate-binding subsites of endo-cellulases were conserved with other different GH5 enzyme properties. Whereas a few conserved amino acid residues and/or short peptides located outside the active site of the GH5 endo-cellulases may be involved in broad substrate specificity of <i>Pc</i>GH5_CD enzyme on xylan, mannan and 1,3-1,4-β-glucan. Moreover, the non-catalytic domains (CBM11-Fn3-CBM3) linked to the GH5 catalytic domain are important for promoting the multifunctional enzyme activities of <i>Pc</i>GH5 on the β-1,4 glycosidic linkages of crystalline cellulose, highly branched polysaccharides, and β-1,4-1,6 and β-1,3-1,4 glycosidic linkages of polysaccharides, especially for the polysaccharides complex contained in agricultural residues. The full-length <i>Pc</i>GH5 is effective in producing oligosaccharides from agricultural residues without pretreatment. Therefore, it is interesting to use it as a source of prebiotics producer for use in various food products.
Authors
- Chakrit Tachaapaikoon (ORCID: https://orcid.org/0000-0001-9795-2558)
- Ayaka Uke (ORCID: https://orcid.org/0000-0001-5077-8353)
- Niendy Virnanda Fatmawati
- Sirilak Baramee (ORCID: https://orcid.org/0000-0001-5122-2971)
- Prattana Ketbot
- Patthra Pason (ORCID: https://orcid.org/0000-0003-0309-8798)
- Apinya Singkhala (ORCID: https://orcid.org/0000-0002-2413-4316)
- Akihiko Kosugi (ORCID: https://orcid.org/0000-0002-3130-1151)
- Rattiya Waeonukul
- Khanok Ratanakhanokchai (ORCID: https://orcid.org/0000-0002-8473-1294)
Institutions
- Japan International Research Center for Agricultural Sciences (JP)
- King Mongkut's University of Technology Thonburi (TH)
Publication Details
- Journal
- Journal of Microbiology and Biotechnology
- Published
- 2025-05-15
- DOI
- https://doi.org/10.4014/jmb.2501.01046
- Citations
- 1
- Primary Topic
- Enzyme Production and Characterization
- Type
- article
- Field-Weighted Citation Impact
- 1.23
Funders
- King Mongkut's University of Technology Thonburi
- Thailand Science Research and Innovation