Non-Catalytic Domains of Glycoside Hydrolase Family 5 from <i>Paenibacillus curdlanolyticus</i> are Important for Promoting Multifunctional Enzyme Activities and Degradation of Agricultural Residues

<i>Pc</i>GH5 from <i>Paenibacillus curdlanolyticus</i> strain B-6 is a modular protein consisting of a catalytic domain of glycoside hydrolase family 5 (GH5), and three non-catalytic domains (a family 11 carbohydrate-binding module (CBM11), a fibronectin type 3 (Fn3), and a family 3 carbohydrate-binding module (CBM3). In this study, the recombinants full-length <i>Pc</i>GH5 and the catalytic domain (<i>Pc</i>GH5_CD) were expressed in <i>Escherichia coli</i> and purified. Most GH5 members exhibit endo-cellulase activity. However, the catalytic domain enzyme of strain B-6 exhibited unique properties, showing multifunctional enzyme activities of endo-cellulase, endo-xylanase, endo-mannanase, and endo-1,3-1,4-β-glucanase. The sequence alignment of <i>Pc</i>GH5_CD compared to other characterized GH5 enzymes suggests that the two catalytic residues and the six substrate-binding subsites of endo-cellulases were conserved with other different GH5 enzyme properties. Whereas a few conserved amino acid residues and/or short peptides located outside the active site of the GH5 endo-cellulases may be involved in broad substrate specificity of <i>Pc</i>GH5_CD enzyme on xylan, mannan and 1,3-1,4-β-glucan. Moreover, the non-catalytic domains (CBM11-Fn3-CBM3) linked to the GH5 catalytic domain are important for promoting the multifunctional enzyme activities of <i>Pc</i>GH5 on the β-1,4 glycosidic linkages of crystalline cellulose, highly branched polysaccharides, and β-1,4-1,6 and β-1,3-1,4 glycosidic linkages of polysaccharides, especially for the polysaccharides complex contained in agricultural residues. The full-length <i>Pc</i>GH5 is effective in producing oligosaccharides from agricultural residues without pretreatment. Therefore, it is interesting to use it as a source of prebiotics producer for use in various food products.

Authors

Institutions

Publication Details

Journal
Journal of Microbiology and Biotechnology
Published
2025-05-15
DOI
https://doi.org/10.4014/jmb.2501.01046
Citations
1
Primary Topic
Enzyme Production and Characterization
Type
article
Field-Weighted Citation Impact
1.23

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Non-Catalytic Domains of Glycoside Hydrolase Family 5 from Paenibacillus curdlanolyticus are Important for Promoting Multifunctional Enzyme Activities and Degradation of Agricultural Residues

Chakrit Tachaapaikoon, Ayaka Uke, Niendy Virnanda Fatmawati, Sirilak Baramee et al.
1 citations
Journal of Microbiology and Biotechnology
Enzyme Production and Characterization
1.23
article

Non-Catalytic Domains of Glycoside Hydrolase Family 5 from Paenibacillus curdlanolyticus are Important for Promoting Multifunctional Enzyme Activities and Degradation of Agricultural Residues

Chakrit Tachaapaikoon, Ayaka Uke, Niendy Virnanda Fatmawati, Sirilak Baramee, Prattana Ketbot, Patthra Pason, Apinya Singkhala, Akihiko Kosugi, Rattiya Waeonukul, Khanok Ratanakhanokchai
article en
1 citations

Abstract

<i>Pc</i>GH5 from <i>Paenibacillus curdlanolyticus</i> strain B-6 is a modular protein consisting of a catalytic domain of glycoside hydrolase family 5 (GH5), and three non-catalytic domains (a family 11 carbohydrate-binding module (CBM11), a fibronectin type 3 (Fn3), and a family 3 carbohydrate-binding module (CBM3). In this study, the recombinants full-length <i>Pc</i>GH5 and the catalytic domain (<i>Pc</i>GH5_CD) were expressed in <i>Escherichia coli</i> and purified. Most GH5 members exhibit endo-cellulase activity. However, the catalytic domain enzyme of strain B-6 exhibited unique properties, showing multifunctional enzyme activities of endo-cellulase, endo-xylanase, endo-mannanase, and endo-1,3-1,4-β-glucanase. The sequence alignment of <i>Pc</i>GH5_CD compared to other characterized GH5 enzymes suggests that the two catalytic residues and the six substrate-binding subsites of endo-cellulases were conserved with other different GH5 enzyme properties. Whereas a few conserved amino acid residues and/or short peptides located outside the active site of the GH5 endo-cellulases may be involved in broad substrate specificity of <i>Pc</i>GH5_CD enzyme on xylan, mannan and 1,3-1,4-β-glucan. Moreover, the non-catalytic domains (CBM11-Fn3-CBM3) linked to the GH5 catalytic domain are important for promoting the multifunctional enzyme activities of <i>Pc</i>GH5 on the β-1,4 glycosidic linkages of crystalline cellulose, highly branched polysaccharides, and β-1,4-1,6 and β-1,3-1,4 glycosidic linkages of polysaccharides, especially for the polysaccharides complex contained in agricultural residues. The full-length <i>Pc</i>GH5 is effective in producing oligosaccharides from agricultural residues without pretreatment. Therefore, it is interesting to use it as a source of prebiotics producer for use in various food products.

Journal of Microbiology and BiotechnologyVol. 35
Japan International Research Center for Agricultural Sciences (JP), King Mongkut's University of Technology Thonburi (TH)
King Mongkut's University of Technology Thonburi, Thailand Science Research and Innovation
Zero hunger
Openalex Percentile: Top 22%
Enzyme Production and Characterization
1.23
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.