New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application

Lampreys (Petromyzontiformes) are an ancient group of fishes with complex life histories. We created a life cycle model that includes an R Shiny interactive web application interface to simulate abundance by life stage. This will allow scientists and managers to connect available demographic information in a framework that can be applied to questions regarding lamprey biology and conservation. We used Pacific lamprey (Entosphenus tridentatus) as a case study to highlight the utility of this model. We applied a global sensitivity analysis to explore the importance of individual life stage parameters to overall population size, and to better understand the implications of existing gaps in knowledge. We also provided example analyses of selected management scenarios (dam passage, fish translocations, and hatchery additions) influencing Pacific lamprey in fresh water. These applications illustrate how the model can be applied to inform conservation efforts. This tool will provide new capabilities for users to explore their own questions about lamprey biology and conservation. Simulations can hone hypotheses and predictions, which can then be empirically tested in the real world.

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Publication Details

Journal
PLoS ONE
Published
2025-05-14
DOI
https://doi.org/10.1371/journal.pone.0323408
Citations
1
Primary Topic
Fish Ecology and Management Studies
Type
article
Field-Weighted Citation Impact
2.31

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article

New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application

Benjamin J. Clemens, Joseph R. Benjamin, Ralph T. Lampman, Jason B. Dunham et al.
1 citations
PLoS ONE
Fish Ecology and Management Studies
2.31
article

New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application

Benjamin J. Clemens, Joseph R. Benjamin, Ralph T. Lampman, Jason B. Dunham, Dylan Gomes
article en
1 citations

Abstract

Lampreys (Petromyzontiformes) are an ancient group of fishes with complex life histories. We created a life cycle model that includes an R Shiny interactive web application interface to simulate abundance by life stage. This will allow scientists and managers to connect available demographic information in a framework that can be applied to questions regarding lamprey biology and conservation. We used Pacific lamprey (Entosphenus tridentatus) as a case study to highlight the utility of this model. We applied a global sensitivity analysis to explore the importance of individual life stage parameters to overall population size, and to better understand the implications of existing gaps in knowledge. We also provided example analyses of selected management scenarios (dam passage, fish translocations, and hatchery additions) influencing Pacific lamprey in fresh water. These applications illustrate how the model can be applied to inform conservation efforts. This tool will provide new capabilities for users to explore their own questions about lamprey biology and conservation. Simulations can hone hypotheses and predictions, which can then be empirically tested in the real world.

PLoS ONEVol. 20(5)
United States Geological Survey (US), Oregon Department of Fish and Wildlife (US), Yakama Nation Tribal Council (US), Forest and Rangeland Ecosystem Science Center
Bonneville Power Administration
Responsible consumption and production
Openalex Percentile: Top 14%
Fish Ecology and Management Studies
2.31
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New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application — Benjamin J. Clemens, Joseph R. Benjamin, et al. · PLoS ONE (2025) | TGRS Research Map | TGRS