<scp>GPU</scp> Accelerated Hybrid Particle‐Field Molecular Dynamics: Multi‐Node/Multi‐<scp>GPU</scp> Implementation and Large‐Scale Benchmarks of the <scp>OCCAM</scp> Code
A parallelization strategy for hybrid particle-field molecular dynamics (hPF-MD) simulations on multi-node multi-GPU architectures is proposed. Two design principles have been followed to achieve a massively parallel version of the OCCAM code for distributed GPU computing: performing all the computations only on GPUs, minimizing data exchange between CPU and GPUs, and among GPUs. The hPF-MD scheme is particularly suitable to develop a GPU-resident and low data exchange code. Comparison of performances obtained using the previous multi-CPU code with the proposed multi-node multi-GPU version are reported. Several non-trivial issues to enable applications for systems of considerable sizes, including large input files handling and memory occupation, have been addressed. Large-scale benchmarks of hPF-MD simulations for system sizes up to 10 billion particles are presented. Performances obtained using a moderate quantity of computational resources highlight the feasibility of hPF-MD simulations in systematic studies of large-scale multibillion particle systems. This opens the possibility to perform systematic/routine studies and to reveal new molecular insights for problems on scales previously inaccessible to molecular simulations.
Authors
- Ying Zhao (ORCID: https://orcid.org/0000-0002-3556-3300)
- Yan Zhou (ORCID: https://orcid.org/0000-0002-6152-3118)
- Toshihiro Kawakatsu (ORCID: https://orcid.org/0009-0003-5488-0082)
- Giuseppe Mensitieri (ORCID: https://orcid.org/0000-0001-9333-0292)
- Zhong‐Yuan Lu (ORCID: https://orcid.org/0000-0001-7884-0091)
- Giuseppe Milano (ORCID: https://orcid.org/0000-0001-6040-9623)
- Rosario Esposito (ORCID: https://orcid.org/0000-0002-3834-6045)
Institutions
- Jilin University (CN)
- Tohoku University (JP)
- State Key Laboratory of Supramolecular Structure and Materials
- Dalian Minzu University (CN)
- University of Naples Federico II (IT)
Publication Details
- Journal
- Journal of Computational Chemistry
- Published
- 2025-05-14
- DOI
- https://doi.org/10.1002/jcc.70126
- Citations
- 2
- Primary Topic
- Block Copolymer Self-Assembly
- Type
- article
- Field-Weighted Citation Impact
- 1.04
Funders
- National Natural Science Foundation of China
- Fundamental Research Funds for the Central Universities