BonoboFlow: viral genome assembly and haplotype reconstruction from nanopore reads
BonoboFlow and corresponding containerized images are publicly available at https://github.com/nchis09/BonoboFlow and https://hub.docker.com/r/nchis09/bonobo_image. The test dataset is available at SRA repository Accession number: PRJNA1137155, http://www.ncbi.nlm.nih.gov/bioproject/1137155.
Authors
- Alfred Ssekagiri (ORCID: https://orcid.org/0000-0002-6549-3550)
- Pontiano Kaleebu (ORCID: https://orcid.org/0000-0001-9706-2977)
- Jyoti Sutar (ORCID: https://orcid.org/0000-0002-5869-2156)
- Sheila N. Balinda (ORCID: https://orcid.org/0000-0001-8374-3122)
- Denis K. Byarugaba (ORCID: https://orcid.org/0000-0002-4175-5659)
- Magambo Phillip Kimuda (ORCID: https://orcid.org/0000-0003-3911-8359)
- Denis Byamukama
- Susan Mugaba
- Jayanta Bhattacharya (ORCID: https://orcid.org/0000-0002-1531-3822)
- F Kato (ORCID: https://orcid.org/0000-0001-5075-0756)
- Nicholas Bbosa (ORCID: https://orcid.org/0000-0003-1280-675X)
- Anne Kapaata (ORCID: https://orcid.org/0000-0002-0726-1276)
- Obondo James Sande (ORCID: https://orcid.org/0000-0002-2301-5980)
- Denis Omara (ORCID: https://orcid.org/0000-0001-7936-1754)
- Christian Ndekezi (ORCID: https://orcid.org/0000-0001-5068-1746)
- Fortunate Natwijuka
- Angella Nakyanzi
Institutions
- Translational Health Science and Technology Institute (IN)
- Shree Guru Gobind Singh Tricentenary University (IN)
- London School of Hygiene & Tropical Medicine (GB)
- Makerere University (UG)
- Uganda Virus Research Institute (UG)
Publication Details
- Journal
- Bioinformatics Advances
- Published
- 2024-12-26
- DOI
- https://doi.org/10.1093/bioadv/vbaf115
- Citations
- 1
- Primary Topic
- Bacteriophages and microbial interactions
- Type
- article
- Field-Weighted Citation Impact
- 0.46
Funders
- United States Agency for International Development
- International AIDS Vaccine Initiative
- London School of Hygiene and Tropical Medicine
- Center for High Performance Computing
- Medical Research Council