Anatomical Grounding Pre-Training for Medical Phrase Grounding

Medical Phrase Grounding (MPG) maps radiological findings described in medical reports to specific regions in medical images. The primary obstacle hindering progress in MPG is the scarcity of annotated data available for training and validation. We propose anatomical grounding as an in-domain pretraining task that aligns anatomical terms with corresponding regions in medical images, leveraging large-scale datasets such as Chest ImaGenome. Our empirical evaluation on MS-CXR demonstrates that anatomical grounding pretraining significantly improves performance in both a zero-shot learning and fine-tuning setting, outperforming state-of-the-art MPG models. Our fine-tuned model achieved state-of-the-art performance on MS-CXR with an mIoU of 61.2, demonstrating the effectiveness of anatomical grounding pretraining for MPG.

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Published
2025-04-14
DOI
https://doi.org/10.1109/isbi60581.2025.10980652
Primary Topic
linguistics and terminology studies
Type
article
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article

Anatomical Grounding Pre-Training for Medical Phrase Grounding

Aaron Nicolson, Shekhar S. Chandra, Wenjun Zhang
linguistics and terminology studies
article

Anatomical Grounding Pre-Training for Medical Phrase Grounding

Aaron Nicolson, Shekhar S. Chandra, Wenjun Zhang
article en

Abstract

Medical Phrase Grounding (MPG) maps radiological findings described in medical reports to specific regions in medical images. The primary obstacle hindering progress in MPG is the scarcity of annotated data available for training and validation. We propose anatomical grounding as an in-domain pretraining task that aligns anatomical terms with corresponding regions in medical images, leveraging large-scale datasets such as Chest ImaGenome. Our empirical evaluation on MS-CXR demonstrates that anatomical grounding pretraining significantly improves performance in both a zero-shot learning and fine-tuning setting, outperforming state-of-the-art MPG models. Our fine-tuned model achieved state-of-the-art performance on MS-CXR with an mIoU of 61.2, demonstrating the effectiveness of anatomical grounding pretraining for MPG.

The University of Queensland (AU), Australian e-Health Research Centre (AU), CSIRO Health and Biosecurity (AU)
Openalex Percentile: Top 87%
linguistics and terminology studies
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Anatomical Grounding Pre-Training for Medical Phrase Grounding — Aaron Nicolson, Shekhar S. Chandra, et al. · (2025) | TGRS Research Map | TGRS