A machine-learning-driven data labeling pipeline for scientific analysis in <i>MLExchange</i>

This study introduces a novel labeling pipeline to accelerate the labeling process of scientific data sets by using artificial intelligence (AI)-guided tagging techniques. This pipeline includes a set of interconnected web-based graphical user interfaces (GUIs), where <i>Data Clinic</i> and <i>MLCoach</i> enable the preparation of machine learning (ML) models for data reduction and classification, respectively, while <i>Label Maker</i> is used for label assignment. Throughout this pipeline, data can be accessed through a direct connection to a file system or through <i>Tiled</i> for access through Hypertext Transfer Protocol (HTTP). Our experimental results present three use cases where this labeling pipeline has been instrumental for the study of large X-ray scattering data sets in the area of pattern recognition, the remote analysis of resonant soft X-ray scattering data and the fine-tuning process of foundation models. These use cases highlight the labeling capabilities of this pipeline, including the ability to label large data sets in a short period of time, to perform remote data analysis while minimizing data movement and to enhance the fine-tuning process of complex ML models with human involvement.

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Publication Details

Journal
Journal of Applied Crystallography
Published
2025-04-04
DOI
https://doi.org/10.1107/s1600576725002328
Citations
1
Primary Topic
Cell Image Analysis Techniques
Type
article
Field-Weighted Citation Impact
1.63

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article

A machine-learning-driven data labeling pipeline for scientific analysis in MLExchange

Wiebke Koepp, Petrus H. Zwart, Apurva Mehta, Zhuowen Zhao et al.
1 citations
Journal of Applied Crystallography
Cell Image Analysis Techniques
1.63
article

A machine-learning-driven data labeling pipeline for scientific analysis in MLExchange

Wiebke Koepp, Petrus H. Zwart, Apurva Mehta, Zhuowen Zhao, Tanny Chávez, Eliot Gann, Edward S. Barnard, Dylan McReynolds, Daniela Ushizima, Subramanian K. R. S. Sankaranarayanan, Alexander Hexemer, Daniel Allan, Nicholas Schwarz, Runbo Jiang
article en
1 citations

Abstract

This study introduces a novel labeling pipeline to accelerate the labeling process of scientific data sets by using artificial intelligence (AI)-guided tagging techniques. This pipeline includes a set of interconnected web-based graphical user interfaces (GUIs), where <i>Data Clinic</i> and <i>MLCoach</i> enable the preparation of machine learning (ML) models for data reduction and classification, respectively, while <i>Label Maker</i> is used for label assignment. Throughout this pipeline, data can be accessed through a direct connection to a file system or through <i>Tiled</i> for access through Hypertext Transfer Protocol (HTTP). Our experimental results present three use cases where this labeling pipeline has been instrumental for the study of large X-ray scattering data sets in the area of pattern recognition, the remote analysis of resonant soft X-ray scattering data and the fine-tuning process of foundation models. These use cases highlight the labeling capabilities of this pipeline, including the ability to label large data sets in a short period of time, to perform remote data analysis while minimizing data movement and to enhance the fine-tuning process of complex ML models with human involvement.

Journal of Applied CrystallographyVol. 58(3)
Argonne National Laboratory (US), Lawrence Berkeley National Laboratory (US), Brookhaven National Laboratory (US), SLAC National Accelerator Laboratory (US), University of Illinois Chicago (US), Research Applications (United States) (US), Linac Coherent Light Source (US)
Basic Energy Sciences, Advanced Scientific Computing Research
Openalex Percentile: Top 15%
Cell Image Analysis Techniques
1.63
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