A machine-learning-driven data labeling pipeline for scientific analysis in <i>MLExchange</i>
This study introduces a novel labeling pipeline to accelerate the labeling process of scientific data sets by using artificial intelligence (AI)-guided tagging techniques. This pipeline includes a set of interconnected web-based graphical user interfaces (GUIs), where <i>Data Clinic</i> and <i>MLCoach</i> enable the preparation of machine learning (ML) models for data reduction and classification, respectively, while <i>Label Maker</i> is used for label assignment. Throughout this pipeline, data can be accessed through a direct connection to a file system or through <i>Tiled</i> for access through Hypertext Transfer Protocol (HTTP). Our experimental results present three use cases where this labeling pipeline has been instrumental for the study of large X-ray scattering data sets in the area of pattern recognition, the remote analysis of resonant soft X-ray scattering data and the fine-tuning process of foundation models. These use cases highlight the labeling capabilities of this pipeline, including the ability to label large data sets in a short period of time, to perform remote data analysis while minimizing data movement and to enhance the fine-tuning process of complex ML models with human involvement.
Authors
- Wiebke Koepp (ORCID: https://orcid.org/0000-0002-3234-9368)
- Petrus H. Zwart (ORCID: https://orcid.org/0000-0003-3315-4092)
- Apurva Mehta (ORCID: https://orcid.org/0000-0003-0870-6932)
- Zhuowen Zhao (ORCID: https://orcid.org/0000-0002-2355-2284)
- Tanny Chávez (ORCID: https://orcid.org/0000-0001-9317-2896)
- Eliot Gann (ORCID: https://orcid.org/0000-0001-5570-8880)
- Edward S. Barnard (ORCID: https://orcid.org/0000-0003-4736-0743)
- Dylan McReynolds (ORCID: https://orcid.org/0000-0002-1539-0297)
- Daniela Ushizima (ORCID: https://orcid.org/0000-0002-7363-9468)
- Subramanian K. R. S. Sankaranarayanan (ORCID: https://orcid.org/0000-0002-9708-396X)
- Alexander Hexemer (ORCID: https://orcid.org/0000-0002-5269-0125)
- Daniel Allan (ORCID: https://orcid.org/0000-0002-5947-6017)
- Nicholas Schwarz
- Runbo Jiang
Institutions
- Argonne National Laboratory (US)
- Lawrence Berkeley National Laboratory (US)
- Brookhaven National Laboratory (US)
- SLAC National Accelerator Laboratory (US)
- University of Illinois Chicago (US)
- Research Applications (United States) (US)
- Linac Coherent Light Source (US)
Publication Details
- Journal
- Journal of Applied Crystallography
- Published
- 2025-04-04
- DOI
- https://doi.org/10.1107/s1600576725002328
- Citations
- 1
- Primary Topic
- Cell Image Analysis Techniques
- Type
- article
- Field-Weighted Citation Impact
- 1.63
Funders
- Basic Energy Sciences
- Advanced Scientific Computing Research