A cost-effective approach to counterbalance the scarcity of medical datasets

This paper presents an innovative methodology for addressing the critical issue of data scarcity in clinical research, specifically within emergency departments. Inspired by the recent advancements in the generative abilities of Large Language Models (LLMs), we devised an automated approach based on LLMs to extend an existing publicly available English dataset to new languages. We constructed a pipeline of multiple automated components which first converts an existing annotated dataset from its complex standard format to a simpler inline annotated format, then generates inline annotations in the target language using LLMs, and finally converts the generated target language inline annotations to the dataset's standard format; a manual validation is envisaged for erroneous and missing annotations. By automating the translation and annotation transfer process, the method we propose significantly reduces the resource-intensive task of collecting data and manually annotating them, thus representing a crucial step toward bridging the gap between the need for clinical research and the availability of high-quality data.

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Publication Details

Journal
Frontiers in Disaster and Emergency Medicine
Published
2025-05-09
DOI
https://doi.org/10.3389/femer.2025.1558200
Primary Topic
Machine Learning in Healthcare
Type
article
Field-Weighted Citation Impact
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article

A cost-effective approach to counterbalance the scarcity of medical datasets

Soumitra Ghosh, Manuela Speranza, Bernardo Magnini, Alberto Lavelli et al.
Frontiers in Disaster and Emergency Medicine
Machine Learning in Healthcare
article

A cost-effective approach to counterbalance the scarcity of medical datasets

Soumitra Ghosh, Manuela Speranza, Bernardo Magnini, Alberto Lavelli, Saeed Farzi, Pietro Ferrazzi, Giulia Mezzanotte
article en

Abstract

This paper presents an innovative methodology for addressing the critical issue of data scarcity in clinical research, specifically within emergency departments. Inspired by the recent advancements in the generative abilities of Large Language Models (LLMs), we devised an automated approach based on LLMs to extend an existing publicly available English dataset to new languages. We constructed a pipeline of multiple automated components which first converts an existing annotated dataset from its complex standard format to a simpler inline annotated format, then generates inline annotations in the target language using LLMs, and finally converts the generated target language inline annotations to the dataset's standard format; a manual validation is envisaged for erroneous and missing annotations. By automating the translation and annotation transfer process, the method we propose significantly reduces the resource-intensive task of collecting data and manually annotating them, thus representing a crucial step toward bridging the gap between the need for clinical research and the availability of high-quality data.

Frontiers in Disaster and Emergency MedicineVol. 3
University of Padua (IT), Fondazione Bruno Kessler (IT)
Openalex Percentile: Top 95%
Machine Learning in Healthcare
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