Virtual Screening of Acetylcholinesterase Inhibitors and Modeling of the Web Service of PAChE

Acetylcholinesterase (AChE) inhibitors are recognized as a viable therapeutic strategy for Alzheimer’s disease (AD). In this study, a discriminator based on machine learning is developed to identify compound structures with AchE inhibitory activity exceeding 5 [Formula: see text]M, leading to the creation of a web service named PAChE. Additionally, a high-throughput screening approach is applied to the natural product database sourced from ZINC, utilizing a combination of drug-like principles, molecular docking, and machine learning discriminators. The scheme identifies six compound molecules with potential inhibitory activity. Molecular dynamics simulations are then employed to assess the static and dynamic binding of these candidate compounds. The findings indicate that all six compounds exhibit favorable static binding and dynamic binding capabilities.

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Publication Details

Journal
Journal of Computational Biophysics and Chemistry
Published
2025-05-09
DOI
https://doi.org/10.1142/s273741652550070x
Primary Topic
Computational Drug Discovery Methods
Type
article
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article

Virtual Screening of Acetylcholinesterase Inhibitors and Modeling of the Web Service of PAChE

Yuan Zhao, Juyuan Chen, Jihang Zhai, Zhiyang Zhang
Journal of Computational Biophysics and Chemistry
Computational Drug Discovery Methods
article

Virtual Screening of Acetylcholinesterase Inhibitors and Modeling of the Web Service of PAChE

Yuan Zhao, Juyuan Chen, Jihang Zhai, Zhiyang Zhang
article en

Abstract

Acetylcholinesterase (AChE) inhibitors are recognized as a viable therapeutic strategy for Alzheimer’s disease (AD). In this study, a discriminator based on machine learning is developed to identify compound structures with AchE inhibitory activity exceeding 5 [Formula: see text]M, leading to the creation of a web service named PAChE. Additionally, a high-throughput screening approach is applied to the natural product database sourced from ZINC, utilizing a combination of drug-like principles, molecular docking, and machine learning discriminators. The scheme identifies six compound molecules with potential inhibitory activity. Molecular dynamics simulations are then employed to assess the static and dynamic binding of these candidate compounds. The findings indicate that all six compounds exhibit favorable static binding and dynamic binding capabilities.

Journal of Computational Biophysics and ChemistryVol. 25(05)
Henan University (CN), Huzhou Normal University (CN)
Openalex Percentile: Top 89%
Computational Drug Discovery Methods
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Virtual Screening of Acetylcholinesterase Inhibitors and Modeling of the Web Service of PAChE — Yuan Zhao, Juyuan Chen, et al. · Journal of Computational Biophysics and Chemistry (2025) | TGRS Research Map | TGRS