Computational modeling and dynamical analysis for B. subtilis competence genic regulation circuit with multiple time delays and external noisy regulation

Bacillus subtilis (B. subtilis), a bacterium known to enter a competent state spontaneously, has garnered significant attention due to its intricate internal regulatory mechanisms. This study proposes a six-dimensional continuous delay differential equation (DDE) model incorporating two-time delays and a stochastic model that accounts for noise, aimed at delving deeper into the dynamic behaviors of the B. subtilis competence gene regulation circuit. Our investigation reveals that time delays play a crucial role in inducing oscillatory behavior within the continuous DDE model. Analyzing the dynamics of multiple time delays proves to be more intricate than studying a single delay. Furthermore, certain parameter adjustments significantly influence the system's dynamic characteristics. The introduction of noise also triggers oscillations, with the irregular oscillation patterns closely aligning with real-world observations. Intriguingly, the effects of parameters and noise regulation undergo significant changes when time delays are jointly considered. This analysis offers a fresh perspective on understanding B. subtilis competence and provides essential theoretical support for subsequent experimental endeavors in this domain of biomathematics.

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Publication Details

Journal
Journal of Bioinformatics and Computational Biology
Published
2025-04-01
DOI
https://doi.org/10.1142/s0219720025500052
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
0.00

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article

Computational modeling and dynamical analysis for B. subtilis competence genic regulation circuit with multiple time delays and external noisy regulation

Fang Yan, Na Zhao, Haihong Liu
Journal of Bioinformatics and Computational Biology
Gene Regulatory Network Analysis
article

Computational modeling and dynamical analysis for B. subtilis competence genic regulation circuit with multiple time delays and external noisy regulation

Fang Yan, Na Zhao, Haihong Liu
article en

Abstract

Bacillus subtilis (B. subtilis), a bacterium known to enter a competent state spontaneously, has garnered significant attention due to its intricate internal regulatory mechanisms. This study proposes a six-dimensional continuous delay differential equation (DDE) model incorporating two-time delays and a stochastic model that accounts for noise, aimed at delving deeper into the dynamic behaviors of the B. subtilis competence gene regulation circuit. Our investigation reveals that time delays play a crucial role in inducing oscillatory behavior within the continuous DDE model. Analyzing the dynamics of multiple time delays proves to be more intricate than studying a single delay. Furthermore, certain parameter adjustments significantly influence the system's dynamic characteristics. The introduction of noise also triggers oscillations, with the irregular oscillation patterns closely aligning with real-world observations. Intriguingly, the effects of parameters and noise regulation undergo significant changes when time delays are jointly considered. This analysis offers a fresh perspective on understanding B. subtilis competence and provides essential theoretical support for subsequent experimental endeavors in this domain of biomathematics.

Journal of Bioinformatics and Computational BiologyVol. 23(02)
Yunnan Normal University (CN), South China University of Technology (CN)
National Natural Science Foundation of China
Gender equality
Openalex Percentile: Top 91%
Gene Regulatory Network Analysis
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