Modeling infrared and vibrational circular dichroism spectra of complex systems: the DFTB/fluctuating charges route

Simulating vibrational spectra of large biomolecular systems in aqueous environments remains a challenge in computational chemistry due to the complex interactions between solutes and solvents. In this study, we employ the density functional tight-binding (DFTB) method, coupled with the fluctuating charges (FQ) force field, to simulate infrared (IR) and vibrational circular dichroism (VCD) spectra of solvated large biomolecules. We focus on three representative systems: the doxorubicin/DNA intercalation complex, ubiquitin, and hen egg white lysozyme. By using molecular dynamics (MD) trajectories to sample the conformational space, we compute spectra for multiple snapshots, employing different DFTB Hamiltonians, including SCC-DFTB, DFTB3, and GFN1-xTB. Our results demonstrate the accuracy and computational efficiency of the DFTB/FQ method in reproducing experimental spectral features, particularly for large, solvated systems which cannot be afforded by other <i>ab initio</i> methodologies. The results of this work highlight the potential of DFTB/FQ as a scalable method for simulating vibrational properties in complex molecular systems.

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Publication Details

Journal
Physical Chemistry Chemical Physics
Published
2025-01-01
DOI
https://doi.org/10.1039/d5cp00228a
Citations
1
Primary Topic
Molecular spectroscopy and chirality
Type
article
Field-Weighted Citation Impact
0.76
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article

Modeling infrared and vibrational circular dichroism spectra of complex systems: the DFTB/fluctuating charges route

Piero Lafiosca, Tommaso Giovannini, Sara Gómez, Chiara Cappelli et al.
1 citations
Physical Chemistry Chemical Physics
Molecular spectroscopy and chirality
0.76
article

Modeling infrared and vibrational circular dichroism spectra of complex systems: the DFTB/fluctuating charges route

Piero Lafiosca, Tommaso Giovannini, Sara Gómez, Chiara Cappelli, Luca Melega
article en
1 citations

Abstract

Simulating vibrational spectra of large biomolecular systems in aqueous environments remains a challenge in computational chemistry due to the complex interactions between solutes and solvents. In this study, we employ the density functional tight-binding (DFTB) method, coupled with the fluctuating charges (FQ) force field, to simulate infrared (IR) and vibrational circular dichroism (VCD) spectra of solvated large biomolecules. We focus on three representative systems: the doxorubicin/DNA intercalation complex, ubiquitin, and hen egg white lysozyme. By using molecular dynamics (MD) trajectories to sample the conformational space, we compute spectra for multiple snapshots, employing different DFTB Hamiltonians, including SCC-DFTB, DFTB3, and GFN1-xTB. Our results demonstrate the accuracy and computational efficiency of the DFTB/FQ method in reproducing experimental spectral features, particularly for large, solvated systems which cannot be afforded by other <i>ab initio</i> methodologies. The results of this work highlight the potential of DFTB/FQ as a scalable method for simulating vibrational properties in complex molecular systems.

Physical Chemistry Chemical PhysicsVol. 27(21)
University of Pisa (IT), University of Rome Tor Vergata (IT), IMT School for Advanced Studies Lucca (IT), Scuola Normale Superiore (IT), Universidad Nacional de Colombia (CO)
Openalex Percentile: Top 31%
Molecular spectroscopy and chirality
0.76
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Modeling infrared and vibrational circular dichroism spectra of complex systems: the DFTB/fluctuating charges route — Piero Lafiosca, Tommaso Giovannini, et al. · Physical Chemistry Chemical Physics (2025) | TGRS Research Map | TGRS