Single‐Cell and Spatial Transcriptomics Explore Purine Metabolism–Related Prognostic Risk Model and Tumor Immune Microenvironment Modulation in Ovarian Cancer

<b>Background:</b> Ovarian cancer (OC) ranks as the second leading cause of gynecological cancer-related deaths in women globally. Single-cell and spatial transcriptomics could precisely describe the heterogeneity of OC that affect the clinical treatment. <b>Methods:</b> Single-cell sequencing and spatial transcriptomics information were from different public datasets. A pseudotime analysis of cellular developmental pathways, score single-cell gene sets, and cell activity ratings in each metabolic pathway were performed. A prognostic model was created using univariate regression analysis, LASSO, and multivariate regression analysis. Finally, the immune microenvironment and immunotherapeutic effects were analyzed for their association with purine metabolism activity. Finally, RT-qPCR was used to estimate the mRNA level of OC in cell lines. <b>Results:</b> We observed a higher purine metabolism score by a signature of 12 purine metabolism-related gene in tumor cells. When compared with fibroblasts, epithelial cells with high scores displayed more intense TGF-<i>β</i> signaling pathway activity. Forty-four differentially expressed purine metabolism-related genes were identified to be substantially expressed in the tumor's core region and were closely linked to purine and pyrimidine metabolic activities. Low-risk population had higher immune infiltration level and immunotherapy results. The NME6+ epithelial cell high-expression group had a greater prognosis and showed a negative connection with the tumor immune dysfunction and exclusion score and cancer-associated fibroblast cell concentration. <b>Conclusion:</b> Purine metabolism was a predictor for OC patients' prognosis. The presence of positive NME6 expression in epithelial cells emerges as a protective factor for OC patients, presenting a possible therapeutic target for personalized treatment.

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Publication Details

Journal
Human Mutation
Published
2025-01-01
DOI
https://doi.org/10.1155/humu/5530325
Citations
1
Primary Topic
Cancer Immunotherapy and Biomarkers
Type
article
Field-Weighted Citation Impact
1.05

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article

Single‐Cell and Spatial Transcriptomics Explore Purine Metabolism–Related Prognostic Risk Model and Tumor Immune Microenvironment Modulation in Ovarian Cancer

Rongli Geng, Songyun Zhao, Weichun Tang, Yinglei Liu et al.
1 citations
Human Mutation
Cancer Immunotherapy and Biomarkers
1.05
article

Single‐Cell and Spatial Transcriptomics Explore Purine Metabolism–Related Prognostic Risk Model and Tumor Immune Microenvironment Modulation in Ovarian Cancer

Rongli Geng, Songyun Zhao, Weichun Tang, Yinglei Liu, Yanli Zheng, Jinhui Liu, Jinjin Yang
article en
1 citations

Abstract

<b>Background:</b> Ovarian cancer (OC) ranks as the second leading cause of gynecological cancer-related deaths in women globally. Single-cell and spatial transcriptomics could precisely describe the heterogeneity of OC that affect the clinical treatment. <b>Methods:</b> Single-cell sequencing and spatial transcriptomics information were from different public datasets. A pseudotime analysis of cellular developmental pathways, score single-cell gene sets, and cell activity ratings in each metabolic pathway were performed. A prognostic model was created using univariate regression analysis, LASSO, and multivariate regression analysis. Finally, the immune microenvironment and immunotherapeutic effects were analyzed for their association with purine metabolism activity. Finally, RT-qPCR was used to estimate the mRNA level of OC in cell lines. <b>Results:</b> We observed a higher purine metabolism score by a signature of 12 purine metabolism-related gene in tumor cells. When compared with fibroblasts, epithelial cells with high scores displayed more intense TGF-<i>β</i> signaling pathway activity. Forty-four differentially expressed purine metabolism-related genes were identified to be substantially expressed in the tumor's core region and were closely linked to purine and pyrimidine metabolic activities. Low-risk population had higher immune infiltration level and immunotherapy results. The NME6+ epithelial cell high-expression group had a greater prognosis and showed a negative connection with the tumor immune dysfunction and exclusion score and cancer-associated fibroblast cell concentration. <b>Conclusion:</b> Purine metabolism was a predictor for OC patients' prognosis. The presence of positive NME6 expression in epithelial cells emerges as a protective factor for OC patients, presenting a possible therapeutic target for personalized treatment.

Human MutationVol. 2025(1)
Nantong University (CN), Affiliated Hospital of Nantong University (CN), Jiangsu Province Hospital (CN), Wuxi People's Hospital (CN), Second Affiliated Hospital of Nantong University, Nanjing Medical University (CN)
Natural Science Foundation of Jiangsu Province
Good health and well-being
Openalex Percentile: Top 22%
Cancer Immunotherapy and Biomarkers
1.05
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