OT-Mation: an open-source code for parsing CSV files into Python scripts for control of OT-2 liquid-handling robotics
OT-Mation is an open-source Python script designed to automate the programming of OT-2 liquid-handling robots, making combinatorial experiments more accessible to researchers. By parsing user-defined CSV files containing information on labware, reagents, pipettes, and experimental design, OT-Mation generates a bespoke Python script compatible with the OT-2 system. OT-Mation enhances reproducibility, reduces human error, and streamlines workflows, making it a valuable addition to any laboratory utilizing OT-2 robotics for liquid handling. While OT-Mation can be used for setting up any type of experiment on the OT-2, its real utility lies in making the connection between multifactorial experimental design software outputs (i.e. design of experiments arrays) and liquid-handling robot executable code. As such, OT-Mation helps bridge the gap between code-based flexibility and user-friendly operation, allowing researchers with limited programming skills to design and execute complex experiments efficiently. <b>Graphical Abstract</b>.
Authors
- James E. M. Stach (ORCID: https://orcid.org/0000-0001-8787-2407)
- Alex Laverick
- Thomas P. Howard (ORCID: https://orcid.org/0000-0002-5546-4043)
- J. A. TOMLINSON (ORCID: https://orcid.org/0000-0003-3141-2326)
- Catherine Harrison
- Katherine Convey
Institutions
- Fera Science (United Kingdom) (GB)
- Newcastle University (GB)
Publication Details
- Journal
- Synthetic Biology
- Published
- 2025-01-01
- DOI
- https://doi.org/10.1093/synbio/ysaf009
- Citations
- 3
- Primary Topic
- Genetics, Bioinformatics, and Biomedical Research
- Type
- article
- Field-Weighted Citation Impact
- 2.42
Funders
- Biotechnology and Biological Sciences Research Council