OT-Mation: an open-source code for parsing CSV files into Python scripts for control of OT-2 liquid-handling robotics

OT-Mation is an open-source Python script designed to automate the programming of OT-2 liquid-handling robots, making combinatorial experiments more accessible to researchers. By parsing user-defined CSV files containing information on labware, reagents, pipettes, and experimental design, OT-Mation generates a bespoke Python script compatible with the OT-2 system. OT-Mation enhances reproducibility, reduces human error, and streamlines workflows, making it a valuable addition to any laboratory utilizing OT-2 robotics for liquid handling. While OT-Mation can be used for setting up any type of experiment on the OT-2, its real utility lies in making the connection between multifactorial experimental design software outputs (i.e. design of experiments arrays) and liquid-handling robot executable code. As such, OT-Mation helps bridge the gap between code-based flexibility and user-friendly operation, allowing researchers with limited programming skills to design and execute complex experiments efficiently. <b>Graphical Abstract</b>.

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Publication Details

Journal
Synthetic Biology
Published
2025-01-01
DOI
https://doi.org/10.1093/synbio/ysaf009
Citations
3
Primary Topic
Genetics, Bioinformatics, and Biomedical Research
Type
article
Field-Weighted Citation Impact
2.42

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article

OT-Mation: an open-source code for parsing CSV files into Python scripts for control of OT-2 liquid-handling robotics

James E. M. Stach, Alex Laverick, Thomas P. Howard, J. A. TOMLINSON et al.
3 citations
Synthetic Biology
Genetics, Bioinformatics, and Biomedical Research
2.42
article

OT-Mation: an open-source code for parsing CSV files into Python scripts for control of OT-2 liquid-handling robotics

James E. M. Stach, Alex Laverick, Thomas P. Howard, J. A. TOMLINSON, Catherine Harrison, Katherine Convey
article en
3 citations

Abstract

OT-Mation is an open-source Python script designed to automate the programming of OT-2 liquid-handling robots, making combinatorial experiments more accessible to researchers. By parsing user-defined CSV files containing information on labware, reagents, pipettes, and experimental design, OT-Mation generates a bespoke Python script compatible with the OT-2 system. OT-Mation enhances reproducibility, reduces human error, and streamlines workflows, making it a valuable addition to any laboratory utilizing OT-2 robotics for liquid handling. While OT-Mation can be used for setting up any type of experiment on the OT-2, its real utility lies in making the connection between multifactorial experimental design software outputs (i.e. design of experiments arrays) and liquid-handling robot executable code. As such, OT-Mation helps bridge the gap between code-based flexibility and user-friendly operation, allowing researchers with limited programming skills to design and execute complex experiments efficiently. <b>Graphical Abstract</b>.

Synthetic BiologyVol. 10(1)
Fera Science (United Kingdom) (GB), Newcastle University (GB)
Biotechnology and Biological Sciences Research Council
Openalex Percentile: Top 12%
Genetics, Bioinformatics, and Biomedical Research
2.42
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