Analysis of single nucleotide polymorphism using KASP technology for identification of domestic pigs breeds

For the first time in the Republic of Belarus, a large-scale bioinformatic analysis of the genomes of Sus scrofa domesticus species, as well as our own molecular genetic studies, was conducted in order to differentiate Duroc, Landrace, Yorkshire, Belarusian Large White, and Belarusian Meat pig breeds. As a result, a list of polymorphic variants with high differentiating potential was formed. The most informative SNPs for differentiating pig breeds are rs332196135, rs81322965, rs322056535, rs80967182, rs81333725, rs80789418, rs319844693, rs80859281, rs80855833. Based on the statistical analysis of genotypes obtained in silico and using competitive allele-specific PCR technology, high values of accuracy and specificity of the proposed models were determined. Methodological recommendations have been developed for the rapid and accurate differentiation of pig breeds.

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Journal
Doklady of the National Academy of Sciences of Belarus
Published
2025-05-06
DOI
https://doi.org/10.29235/1561-8323-2025-69-2-129-136
Primary Topic
Genetic and phenotypic traits in livestock
Type
article
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article

Analysis of single nucleotide polymorphism using KASP technology for identification of domestic pigs breeds

V. N. Kipen, M. E. Mikhailova, R. I. Sheyko, Е. В. Снытков
Doklady of the National Academy of Sciences of Belarus
Genetic and phenotypic traits in livestock
article

Analysis of single nucleotide polymorphism using KASP technology for identification of domestic pigs breeds

V. N. Kipen, M. E. Mikhailova, R. I. Sheyko, Е. В. Снытков
article en

Abstract

For the first time in the Republic of Belarus, a large-scale bioinformatic analysis of the genomes of Sus scrofa domesticus species, as well as our own molecular genetic studies, was conducted in order to differentiate Duroc, Landrace, Yorkshire, Belarusian Large White, and Belarusian Meat pig breeds. As a result, a list of polymorphic variants with high differentiating potential was formed. The most informative SNPs for differentiating pig breeds are rs332196135, rs81322965, rs322056535, rs80967182, rs81333725, rs80789418, rs319844693, rs80859281, rs80855833. Based on the statistical analysis of genotypes obtained in silico and using competitive allele-specific PCR technology, high values of accuracy and specificity of the proposed models were determined. Methodological recommendations have been developed for the rapid and accurate differentiation of pig breeds.

Doklady of the National Academy of Sciences of BelarusVol. 69(2)
Institute of Genetics and Cytology of the National Academy of Sciences of Belarus (BY)
Openalex Percentile: Top 88%
Genetic and phenotypic traits in livestock
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