Scaffold-level genome assembly of Fusarium neocosmosporiellum strain CA18-1

Fusarium neocosmosporiellum causes alfalfa root rot, leading to significant economic losses. To explore the genetics of F. neocosmosporiellum, strain CA18-1 was isolated from infected alfalfa roots and subjected to whole-genome analysis. A scaffold-level reference genome of strain CA18-1 was assembled using both Nanopore long-read and Illumina short-read sequencing technologies. The assembled genome measured 63,424,297 base pairs (bp) in size, with a contig N50 of 6,480,858 bp and a contig N90 of 3,230,245 bp. A total of 10,486,459 bp repeat sequences and 28,006 protein-coding genes were predicted, of which 15,389 were functionally annotated. This study enhances our understanding of the genetic basis for F. neocosmosporiellum's pathogenicity, providing a foundation for future studies on disease control and fungal evolution.

Authors

Institutions

Publication Details

Journal
Scientific Data
Published
2025-05-08
DOI
https://doi.org/10.1038/s41597-025-05073-x
Primary Topic
Plant Pathogens and Fungal Diseases
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Scaffold-level genome assembly of Fusarium neocosmosporiellum strain CA18-1

Jianjun Hao, Ruifang Jia, Zhengqiang Chen, Shengze Wang et al.
Scientific Data
Plant Pathogens and Fungal Diseases
article

Scaffold-level genome assembly of Fusarium neocosmosporiellum strain CA18-1

Jianjun Hao, Ruifang Jia, Zhengqiang Chen, Shengze Wang, Yuanyuan Zhang, Le Wang, Na Wang, Kejian Lin, Xiaoluo Zhang
article en

Abstract

Fusarium neocosmosporiellum causes alfalfa root rot, leading to significant economic losses. To explore the genetics of F. neocosmosporiellum, strain CA18-1 was isolated from infected alfalfa roots and subjected to whole-genome analysis. A scaffold-level reference genome of strain CA18-1 was assembled using both Nanopore long-read and Illumina short-read sequencing technologies. The assembled genome measured 63,424,297 base pairs (bp) in size, with a contig N50 of 6,480,858 bp and a contig N90 of 3,230,245 bp. A total of 10,486,459 bp repeat sequences and 28,006 protein-coding genes were predicted, of which 15,389 were functionally annotated. This study enhances our understanding of the genetic basis for F. neocosmosporiellum's pathogenicity, providing a foundation for future studies on disease control and fungal evolution.

Scientific DataVol. 12(1)
Inner Mongolia Academy of Agricultural & Animal Husbandry Sciences (CN), Institute of Grassland Research (CN), University of Maine (US)
National Key Research and Development Program of China
Zero hunger
Openalex Percentile: Top 90%
Plant Pathogens and Fungal Diseases
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.