Free energy profiles for chemical reactions in solution from high-dimensional neural network potentials: The case of the Strecker synthesis

Machine learning potentials (MLPs) have become a popular tool in chemistry and materials science as they combine the accuracy of electronic structure calculations with the high computational efficiency of analytic potentials. MLPs are particularly useful for computationally demanding simulations such as the determination of free energy profiles governing chemical reactions in solution, but to date, such applications are still rare. In this work, we show how umbrella sampling simulations can be combined with active learning of high-dimensional neural network potentials (HDNNPs) to construct free energy profiles in a systematic way. For the example of the first step of Strecker synthesis of glycine in aqueous solution, we provide a detailed analysis of the improving quality of HDNNPs for datasets of increasing size. We find that, in addition to the typical quantification of energy and force errors with respect to the underlying density functional theory data, the long-term stability of the simulations and the convergence of physical properties should be rigorously monitored to obtain reliable and converged free energy profiles of chemical reactions in solution.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2025-05-06
DOI
https://doi.org/10.1063/5.0268948
Citations
2
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
1.04

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article

Free energy profiles for chemical reactions in solution from high-dimensional neural network potentials: The case of the Strecker synthesis

Timothée Devergne, Jörg Behler, Antonino Marco Saitta, Alea Miako Tokita
2 citations
The Journal of Chemical Physics
Machine Learning in Materials Science
1.04
article

Free energy profiles for chemical reactions in solution from high-dimensional neural network potentials: The case of the Strecker synthesis

Timothée Devergne, Jörg Behler, Antonino Marco Saitta, Alea Miako Tokita
article en
2 citations

Abstract

Machine learning potentials (MLPs) have become a popular tool in chemistry and materials science as they combine the accuracy of electronic structure calculations with the high computational efficiency of analytic potentials. MLPs are particularly useful for computationally demanding simulations such as the determination of free energy profiles governing chemical reactions in solution, but to date, such applications are still rare. In this work, we show how umbrella sampling simulations can be combined with active learning of high-dimensional neural network potentials (HDNNPs) to construct free energy profiles in a systematic way. For the example of the first step of Strecker synthesis of glycine in aqueous solution, we provide a detailed analysis of the improving quality of HDNNPs for datasets of increasing size. We find that, in addition to the typical quantification of energy and force errors with respect to the underlying density functional theory data, the long-term stability of the simulations and the convergence of physical properties should be rigorously monitored to obtain reliable and converged free energy profiles of chemical reactions in solution.

The Journal of Chemical PhysicsVol. 162(17)
Centre National de la Recherche Scientifique (FR), Italian Institute of Technology (IT), Sorbonne Université (FR), Institut de minéralogie, de physique des matériaux et de cosmochimie (FR), Ruhr University Bochum (DE)
Deutsche Forschungsgemeinschaft, Grand Équipement National De Calcul Intensif
Affordable and clean energy
Openalex Percentile: Top 26%
Machine Learning in Materials Science
1.04
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