Evaluation of turnaround times and performance of in-house ChromaCode high-definition PCR compared to send-out next-generation sequencing in non–small cell lung cancer

Of the 58 samples, 100% concordance was observed between NGS and ChromaCode assays, with all 5 (~8.6%) positive cases-including 1 ROS1, 1 EGFR L858R, 1 KRAS G12C, and 2 NTRK1/2/3 rearrangements-accurately detected. Implementation of the ChromaCode NSCLC assay allows for an average institution-specific turnaround time of 5.01 days, subject to logistical constraints, compared to 10.4 days for send-out next-generation sequencing (U statistic = 153; α = 0.05).

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Publication Details

Journal
American Journal of Clinical Pathology
Published
2025-05-06
DOI
https://doi.org/10.1093/ajcp/aqaf038
Citations
1
Primary Topic
Cancer Genomics and Diagnostics
Type
article
Field-Weighted Citation Impact
0.94
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article

Evaluation of turnaround times and performance of in-house ChromaCode high-definition PCR compared to send-out next-generation sequencing in non–small cell lung cancer

Mark W. Linder, Mustafa Al‐Kawaaz, Nathan C Hogarth
1 citations
American Journal of Clinical Pathology
Cancer Genomics and Diagnostics
0.94
article

Evaluation of turnaround times and performance of in-house ChromaCode high-definition PCR compared to send-out next-generation sequencing in non–small cell lung cancer

Mark W. Linder, Mustafa Al‐Kawaaz, Nathan C Hogarth
article en
1 citations

Abstract

Of the 58 samples, 100% concordance was observed between NGS and ChromaCode assays, with all 5 (~8.6%) positive cases-including 1 ROS1, 1 EGFR L858R, 1 KRAS G12C, and 2 NTRK1/2/3 rearrangements-accurately detected. Implementation of the ChromaCode NSCLC assay allows for an average institution-specific turnaround time of 5.01 days, subject to logistical constraints, compared to 10.4 days for send-out next-generation sequencing (U statistic = 153; α = 0.05).

American Journal of Clinical PathologyVol. 164(2)
University of Louisville (US)
Good health and well-being
Openalex Percentile: Top 25%
Cancer Genomics and Diagnostics
0.94
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