dsOMOP: bridging OMOP CDM and DataSHIELD for secure federated analysis of standardized clinical data
The general information page for the dsOMOP environment is available at https://isglobal-brge.github.io/dsOMOP, where the most recent installation instructions and usage guides for all dsOMOP packages and their extensions can be found in the "Packages" section.The dsOMOP package and its complementary tools are fully available under the MIT license on GitHub: dsOMOP (https://github.com/isglobal-brge/dsOMOP), dsOMOPClient (https://github.com/isglobal-brge/dsOMOPClient), dsOMOPHelper (https://github.com/isglobal-brge/dsOMOPHelper), and dsOMOP.oracle (https://github.com/isglobal-brge/dsOMOP.oracle).Usage vignettes for the client-side packages are available at the websites of dsOMOPClient (https://isglobal-brge.github.io/dsOMOPClient) and dsOMOPHelper (https://isglobal-brge.github.io/dsOMOPHelper). A permanent archival snapshot of the exact code used in this manuscript is deposited at Figshare: https://doi.org/10.6084/m9.figshare.28607186.
Authors
- J. E. Houghtaling
- Xavier Escribà-Montagut (ORCID: https://orcid.org/0000-0003-2888-8948)
- David Sarrat-González (ORCID: https://orcid.org/0000-0002-9064-3303)
- Juan R González (ORCID: https://orcid.org/0000-0003-3267-2146)
Institutions
- Tufts University (US)
- Instituto de Salud Carlos III (ES)
- Barcelona Institute for Global Health (ES)
- Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública (ES)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-05-06
- DOI
- https://doi.org/10.1093/bioinformatics/btaf286
- Citations
- 1
- Primary Topic
- Scientific Computing and Data Management
- Type
- article
- Field-Weighted Citation Impact
- 4.17
Funders
- Tufts Medical Center
- Centres de Recerca de Catalunya
- European Commission
- Generalitat de Catalunya
- Institute for Bioengineering of Catalonia
- Instituto de Salud Carlos III
- Agencia Estatal de Investigación
- CHIST-ERA