dsOMOP: bridging OMOP CDM and DataSHIELD for secure federated analysis of standardized clinical data

The general information page for the dsOMOP environment is available at https://isglobal-brge.github.io/dsOMOP, where the most recent installation instructions and usage guides for all dsOMOP packages and their extensions can be found in the "Packages" section.The dsOMOP package and its complementary tools are fully available under the MIT license on GitHub: dsOMOP (https://github.com/isglobal-brge/dsOMOP), dsOMOPClient (https://github.com/isglobal-brge/dsOMOPClient), dsOMOPHelper (https://github.com/isglobal-brge/dsOMOPHelper), and dsOMOP.oracle (https://github.com/isglobal-brge/dsOMOP.oracle).Usage vignettes for the client-side packages are available at the websites of dsOMOPClient (https://isglobal-brge.github.io/dsOMOPClient) and dsOMOPHelper (https://isglobal-brge.github.io/dsOMOPHelper). A permanent archival snapshot of the exact code used in this manuscript is deposited at Figshare: https://doi.org/10.6084/m9.figshare.28607186.

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Publication Details

Journal
Bioinformatics
Published
2025-05-06
DOI
https://doi.org/10.1093/bioinformatics/btaf286
Citations
1
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
4.17

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article

dsOMOP: bridging OMOP CDM and DataSHIELD for secure federated analysis of standardized clinical data

J. E. Houghtaling, Xavier Escribà-Montagut, David Sarrat-González, Juan R González
1 citations
Bioinformatics
Scientific Computing and Data Management
4.17
article

dsOMOP: bridging OMOP CDM and DataSHIELD for secure federated analysis of standardized clinical data

J. E. Houghtaling, Xavier Escribà-Montagut, David Sarrat-González, Juan R González
article en
1 citations

Abstract

The general information page for the dsOMOP environment is available at https://isglobal-brge.github.io/dsOMOP, where the most recent installation instructions and usage guides for all dsOMOP packages and their extensions can be found in the "Packages" section.The dsOMOP package and its complementary tools are fully available under the MIT license on GitHub: dsOMOP (https://github.com/isglobal-brge/dsOMOP), dsOMOPClient (https://github.com/isglobal-brge/dsOMOPClient), dsOMOPHelper (https://github.com/isglobal-brge/dsOMOPHelper), and dsOMOP.oracle (https://github.com/isglobal-brge/dsOMOP.oracle).Usage vignettes for the client-side packages are available at the websites of dsOMOPClient (https://isglobal-brge.github.io/dsOMOPClient) and dsOMOPHelper (https://isglobal-brge.github.io/dsOMOPHelper). A permanent archival snapshot of the exact code used in this manuscript is deposited at Figshare: https://doi.org/10.6084/m9.figshare.28607186.

BioinformaticsVol. 41(6)
Tufts University (US), Instituto de Salud Carlos III (ES), Barcelona Institute for Global Health (ES), Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública (ES)
Tufts Medical Center, Centres de Recerca de Catalunya, European Commission, Generalitat de Catalunya, Institute for Bioengineering of Catalonia, Instituto de Salud Carlos III, Agencia Estatal de Investigación, CHIST-ERA
Partnerships for the goals
Openalex Percentile: Top 6%
Scientific Computing and Data Management
4.17
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