The dissipation theory of aging: a quantitative analysis using a cellular aging map

We propose a new theory for aging based on dynamical systems and provide a data-driven computational method to quantify the changes at the cellular level. We use ergodic theory to decompose the dynamics of changes during aging and show that aging is fundamentally a dissipative process within biological systems, akin to dynamical systems where dissipation occurs due to non-conservative forces. To quantify the dissipation dynamics, we employ a transformer-based machine learning algorithm to analyze gene expression data, incorporating age as a token to assess how age-related dissipation is reflected in the embedding space. By evaluating the dynamics of gene and age embeddings, we provide a cellular aging map (CAM) and identify patterns indicative of divergence in gene embedding space, nonlinear transitions, and entropy variations during aging for various tissues and cell types. Our results provide a novel perspective on aging as a dissipative process and introduce a computational framework that enables measuring age-related changes with molecular resolution.

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Publication Details

Journal
npj Aging
Published
2025-10-09
DOI
https://doi.org/10.1038/s41514-025-00277-2
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
0.00

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article

The dissipation theory of aging: a quantitative analysis using a cellular aging map

Elazer R. Edelman, Yufan Xia, Farhan Khodaee, Rohola Zandie
npj Aging
Gene Regulatory Network Analysis
article

The dissipation theory of aging: a quantitative analysis using a cellular aging map

Elazer R. Edelman, Yufan Xia, Farhan Khodaee, Rohola Zandie
article en

Abstract

We propose a new theory for aging based on dynamical systems and provide a data-driven computational method to quantify the changes at the cellular level. We use ergodic theory to decompose the dynamics of changes during aging and show that aging is fundamentally a dissipative process within biological systems, akin to dynamical systems where dissipation occurs due to non-conservative forces. To quantify the dissipation dynamics, we employ a transformer-based machine learning algorithm to analyze gene expression data, incorporating age as a token to assess how age-related dissipation is reflected in the embedding space. By evaluating the dynamics of gene and age embeddings, we provide a cellular aging map (CAM) and identify patterns indicative of divergence in gene embedding space, nonlinear transitions, and entropy variations during aging for various tissues and cell types. Our results provide a novel perspective on aging as a dissipative process and introduce a computational framework that enables measuring age-related changes with molecular resolution.

npj AgingVol. 11(1)
Brigham and Women's Hospital (US), Massachusetts Institute of Technology (US)
National Institutes of Health
Openalex Percentile: Top 91%
Gene Regulatory Network Analysis
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