Application of 3D atom pair map in an attention model for enhanced drug virtual screening
This study demonstrates the utility of a novel molecular representation, 3D APM and a deep learning model based on it for virtual screening, suggesting that many other prediction models would also benefit from adopting APM. An open-source script to generate 3D APM is available at https://github.com/rimeless/APM.
Authors
- Wankyu Kim (ORCID: https://orcid.org/0000-0003-3181-0594)
- Geun-Hyeok Ryu
Institutions
- Ewha Womans University (KR)
Publication Details
- Journal
- Journal of Cheminformatics
- Published
- 2025-05-05
- DOI
- https://doi.org/10.1186/s13321-025-01023-2
- Citations
- 1
- Primary Topic
- Computational Drug Discovery Methods
- Type
- article
- Field-Weighted Citation Impact
- 1.50
Funders
- National Research Foundation
- National Research Foundation of Korea