Leveraging Subjective Parameters and Biomarkers in Machine Learning Models: The Feasibility of lnc-IL7R for Managing Emphysema Progression
<b>Background/Objectives:</b> Chronic obstructive pulmonary disease (COPD) remains a leading cause of death worldwide, with emphysema progression providing valuable insights into disease development. Clinical assessment approaches, including pulmonary function tests and high-resolution computed tomography, are limited by accessibility constraints and radiation exposure. This study, therefore, proposed an alternative approach by integrating the novel biomarker long non-coding interleukin-7 receptor α-subunit gene (<i>lnc-Il7R</i>), along with other easily accessible clinical and biochemical metrics, into machine learning (ML) models. <b>Methods:</b> This cohort study collected baseline characteristics, COPD Assessment Test (CAT) scores, and biochemical details from the enrolled participants. Associations with emphysema severity, defined by a low attenuation area percentage (LAA%) threshold of 15%, were evaluated using simple and multivariate-adjusted models. The dataset was then split into training and validation (80%) and test (20%) subsets. Five ML models were employed, with the best-performing model being further analyzed for feature importance. <b>Results:</b> The majority of participants were elderly males. Compared to the LAA% <15% group, the LAA% ≥15% group demonstrated a significantly higher body mass index (BMI), poor pulmonary function, and lower expression levels of <i>lnc-Il7R</i> (all <i>p</i> < 0.01). Fold changes in <i>lnc-IL7R</i> were strongly and negatively associated with LAA% (<i>p</i> < 0.01). The random forest (RF) model achieved the highest accuracy and area under the receiver operating characteristic curve (AUROC) across datasets. A feature importance analysis identified <i>lnc-IL7R</i> fold changes as the strongest predictor for emphysema classification (LAA% ≥15%), followed by CAT scores and BMI. <b>Conclusions:</b> Machine learning models incorporated accessible clinical and biochemical markers, particularly the novel biomarker <i>lnc-IL7R</i>, achieving classification accuracy and AUROC exceeding 75% in emphysema assessments. These findings offer promising opportunities for improving emphysema classification and COPD management.
Authors
- Kuan-Yuan Chen (ORCID: https://orcid.org/0000-0002-0266-9627)
- I-Jung Liu
- Po‐Hao Feng (ORCID: https://orcid.org/0000-0002-3569-3746)
- Chien‐Hua Tseng (ORCID: https://orcid.org/0000-0001-7020-1180)
- Yueh-His Chen
- Tzu-Yu Cheng (ORCID: https://orcid.org/0000-0002-7887-2728)
- Shu‐Chuan Ho (ORCID: https://orcid.org/0000-0002-1616-8647)
- Ching-Shan Luo
- Sheng‐Ming Wu (ORCID: https://orcid.org/0000-0003-1746-5771)
- Kang‐Yun Lee (ORCID: https://orcid.org/0000-0003-4705-5802)
- Tzu-Tao Chen
- Cheng-Yu Tsai (ORCID: https://orcid.org/0000-0002-1639-4257)
- Huei-Tyng Huang (ORCID: https://orcid.org/0000-0001-9741-3538)
- Arnab Majumdar (ORCID: https://orcid.org/0000-0002-6332-7858)
Institutions
- Queen Mary University of London (GB)
- Wan Fang Hospital (TW)
- Taipei Medical University-Shuang Ho Hospital (TW)
- Imperial College London (GB)
- Taipei Medical University (TW)
Publication Details
- Journal
- Diagnostics
- Published
- 2025-05-03
- DOI
- https://doi.org/10.3390/diagnostics15091165
- Primary Topic
- Chronic Obstructive Pulmonary Disease (COPD) Research
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Taipei Medical University
- Taipei Medical University-Shuang Ho Hospital, Ministry of Health and Welfare