Chromosome-level genome assembly of <i>Protandrena</i> ( <i>Anthemurgus</i> ) <i>passiflorae</i> (Hymenoptera: Andrenidae), a host-plant specialist bee
The passion flower bee, Protandrena (Anthemurgus) passiflorae (Robertson) is a monolectic, host-plant specialist of the passion flower plant Passiflora lutea L. Using a single adult male individual, we generated long-read PacBio HiFi, HiC, and short-read RNA sequencing data to build a well-annotated, chromosome-level genome assembly for this species. The final nuclear genome is 249 Mb with 150 × coverage and with most of the genome scaffolding into 12 chromosomes. The scaffold N50 is 21.4 Mb and the genome has a Benchmarking Universal Single-Copy Ortholog score of 97.2% for 5991 hymenopteran genes. BRAKER3 annotation of the genome identified 12,098 genes and 15,353 total transcripts and found that 20.27% of the genome is made up of repetitive elements. We resolved a mitochondrial genome of 12.7 kb. The P. passiflorae genome represents one of only a few published andrenid bee genomes and one of the first monolectic bees. This new high-quality genome will serve as a valuable resource for investigating the genomic basis of specialization and for providing a useful resource for studying pollinator health and conservation.
Authors
- Michael G. Branstetter (ORCID: https://orcid.org/0000-0002-3734-6166)
- Jay D. Evans (ORCID: https://orcid.org/0000-0002-0036-4651)
- Katherine A. Parys (ORCID: https://orcid.org/0000-0001-7459-3687)
- Rena M. Schweizer (ORCID: https://orcid.org/0000-0002-8812-8177)
- Scott M. Geib (ORCID: https://orcid.org/0000-0002-9511-5139)
- Sheina B. Sim (ORCID: https://orcid.org/0000-0003-0914-6914)
- Ligia R. Benavides (ORCID: https://orcid.org/0000-0003-4387-1220)
Institutions
- Utah State University (US)
- Agricultural Research Service (US)
- Harvard University (US)
- Beltsville Agricultural Research Center (US)
- Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center (US)
- University of Montana (US)
Publication Details
- Journal
- G3 Genes Genomes Genetics
- Published
- 2025-05-03
- DOI
- https://doi.org/10.1093/g3journal/jkaf096
- Citations
- 1
- Primary Topic
- Plant and animal studies
- Type
- article
- Field-Weighted Citation Impact
- 3.03
Funders
- U.S. Department of Agriculture
- University of Illinois at Urbana-Champaign
- Agricultural Research Service