in situ Transformation of Information Into DNA Storage With Microfluidic Very Large‐Scale Integration Platform

DNA data storage offers a highly compact and efficient alternative to traditional data storage methods. However, DNA writing remains time-consuming and relies on specialized infrastructure. Here, a novel, high-throughput, in situ DNA writing strategy is introduced using microfluidic very-large-scale integration (VLSI) chips inspired by dynamic random-access memory (DRAM) architecture. This method enables rapid encoding of binary data into DNA via overlap-extension PCR (OE-PCR) and programmable microfluidic partitioning. Using a widely accessible integrated microfluidic circuit, 2304 bits of data within 4 h encoded, demonstrating scalable, parallelized DNA writing on a benchtop instrument. Next-generation sequencing confirmed high-fidelity encoding with excellent signal-to-noise ratios. Furthermore, DNA data can be quickly decoded using a microfluidic VLSI qPCR platform, reducing the write-to-read latency to under 8 h. This proof-of-concept highlights the potential of programmable microfluidic VLSI platforms for efficient, rapid, and portable DNA writing and decoding, paving the way for scalable, high-throughput, decentralized DNA data storage and gene synthesis.

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Institutions

Publication Details

Journal
Small
Published
2025-05-02
DOI
https://doi.org/10.1002/smll.202412225
Citations
1
Primary Topic
DNA and Biological Computing
Type
article
Field-Weighted Citation Impact
0.81

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article

in situ Transformation of Information Into DNA Storage With Microfluidic Very Large‐Scale Integration Platform

Lih Feng Cheow, Shaun Wei Yang Ngang, Dongdong Liu
1 citations
Small
DNA and Biological Computing
0.81
article

in situ Transformation of Information Into DNA Storage With Microfluidic Very Large‐Scale Integration Platform

Lih Feng Cheow, Shaun Wei Yang Ngang, Dongdong Liu
article en
1 citations

Abstract

DNA data storage offers a highly compact and efficient alternative to traditional data storage methods. However, DNA writing remains time-consuming and relies on specialized infrastructure. Here, a novel, high-throughput, in situ DNA writing strategy is introduced using microfluidic very-large-scale integration (VLSI) chips inspired by dynamic random-access memory (DRAM) architecture. This method enables rapid encoding of binary data into DNA via overlap-extension PCR (OE-PCR) and programmable microfluidic partitioning. Using a widely accessible integrated microfluidic circuit, 2304 bits of data within 4 h encoded, demonstrating scalable, parallelized DNA writing on a benchtop instrument. Next-generation sequencing confirmed high-fidelity encoding with excellent signal-to-noise ratios. Furthermore, DNA data can be quickly decoded using a microfluidic VLSI qPCR platform, reducing the write-to-read latency to under 8 h. This proof-of-concept highlights the potential of programmable microfluidic VLSI platforms for efficient, rapid, and portable DNA writing and decoding, paving the way for scalable, high-throughput, decentralized DNA data storage and gene synthesis.

SmallVol. 21(26)
Shanghai University (CN), National University of Singapore (SG)
National Research Foundation
Industry, innovation and infrastructure
Openalex Percentile: Top 28%
DNA and Biological Computing
0.81
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