Chromosome-level genome assembly of the freshwater bivalve Anodonta woodiana

The freshwater bivalve Anodonta (Sinanodonta) woodiana originated in the Yangtze River basin of China and is now widely distributed in Asia, Europe, North America, and Africa. This species has important economic and ecological value. Using Illumina, PacBio, and Hi-C technology, a high-quality chromosome-level genome of A. woodiana was assembled. The genome size was 2.80 Gb, with a contig N50 of 4.01 Mb and a scaffold N50 of 143.34 Mb. In total, 1609 contigs, accounting for 99.57% of the total assembled genome, were anchored into 19 chromosomes. In total, 1.51 Gb repeat sequences were annotated and 44,785 protein-coding genes were predicted. This study is the first to reveal the genome of A. woodiana and the genus Anodonta, which will effectively contribute to investigations of this species' biology, molecular mechanisms in response to environmental stress, and resource management.

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Publication Details

Journal
Scientific Data
Published
2025-05-02
DOI
https://doi.org/10.1038/s41597-025-05078-6
Citations
1
Primary Topic
Aquatic Invertebrate Ecology and Behavior
Type
article
Field-Weighted Citation Impact
1.72

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article

Chromosome-level genome assembly of the freshwater bivalve Anodonta woodiana

Junren Xue, Meiyi Wang, Xiubao Chen, Tao Jiang et al.
1 citations
Scientific Data
Aquatic Invertebrate Ecology and Behavior
1.72
article

Chromosome-level genome assembly of the freshwater bivalve Anodonta woodiana

Junren Xue, Meiyi Wang, Xiubao Chen, Tao Jiang, Kai Liu, Mengya Gu
article en
1 citations

Abstract

The freshwater bivalve Anodonta (Sinanodonta) woodiana originated in the Yangtze River basin of China and is now widely distributed in Asia, Europe, North America, and Africa. This species has important economic and ecological value. Using Illumina, PacBio, and Hi-C technology, a high-quality chromosome-level genome of A. woodiana was assembled. The genome size was 2.80 Gb, with a contig N50 of 4.01 Mb and a scaffold N50 of 143.34 Mb. In total, 1609 contigs, accounting for 99.57% of the total assembled genome, were anchored into 19 chromosomes. In total, 1.51 Gb repeat sequences were annotated and 44,785 protein-coding genes were predicted. This study is the first to reveal the genome of A. woodiana and the genus Anodonta, which will effectively contribute to investigations of this species' biology, molecular mechanisms in response to environmental stress, and resource management.

Scientific DataVol. 12(1)
Dalian Ocean University (CN), Nanjing Agricultural University (CN), Chinese Academy of Fishery Sciences (CN)
National Natural Science Foundation of China, Government of Jiangsu Province, Natural Science Foundation of Jiangsu Province, Central Public-interest Scientific Institution Basal Research Fund, Chinese Academy of Fishery Sciences
Openalex Percentile: Top 18%
Aquatic Invertebrate Ecology and Behavior
1.72
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