PPI network identifies interacting pathogenic signaling pathways in <i>Candida albicans</i>

<i>Candida albicans</i>, an opportunistic and systemic infection causing fungus, causes skin, nail, and mucosal layer lesions in healthy individuals and hospital borne catheter-related and nosocomial infections. This particular fungus exists in two distinct stages in its life cycle: yeast and hyphae. In this study, 20 signaling pathways associated with 177 proteins from <i>C. albicans</i> were identified to construct a PPI network. The core part of the network consisted of 165 proteins. Network topology analyses revealed that the formed PPI network is biologically robust and scale-free, with significant interactions between proteins through 19 252 shortest pathways. In this network, the top 10 hub proteins (RAS1, CDC42, HOG1, CPH1, STE11, EFG1, CEK1, HSP90, TEC1 and CST20) were identified using network analysis, which seem to be the most important proteins involved in different pathways for the development of pathogenesis and virulence. Modular analysis of the network resulted in top six sub-networks, three of which shared eight hub proteins. Ontology and functional enrichment analyses revealed that the majority of the proteins were associated with regulation of transcription by RNA polymerase II, plasma membrane and nucleic acid binding in biological processes, and cellular components and molecular functions, respectively. Enrichment analysis indicated that the proteins were mostly involved in oxidative phosphorylation and purine metabolism signaling pathways. We determined the complex web of signaling pathway involving proteins <i>via</i> PPI network analysis to unravel and decipher protein interactions within <i>C. albicans</i> to understand the complex pathogenesis processes for targeted therapeutic interferences using novel bioinformatics strategies.

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Publication Details

Journal
Molecular Omics
Published
2025-05-01
DOI
https://doi.org/10.1039/d5mo00042d
Citations
1
Primary Topic
Antifungal resistance and susceptibility
Type
article
Field-Weighted Citation Impact
1.40
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article

PPI network identifies interacting pathogenic signaling pathways in Candida albicans

Tanima Saha, Amalesh Mondal, Sanjib Das, Sudeshna Samanta et al.
1 citations
Molecular Omics
Antifungal resistance and susceptibility
1.40
article

PPI network identifies interacting pathogenic signaling pathways in Candida albicans

Tanima Saha, Amalesh Mondal, Sanjib Das, Sudeshna Samanta, Achintya Mohan Goswami, Tanushree Mondal, P. Mondal, Deepanjan Chattopadhyay
article en
1 citations

Abstract

<i>Candida albicans</i>, an opportunistic and systemic infection causing fungus, causes skin, nail, and mucosal layer lesions in healthy individuals and hospital borne catheter-related and nosocomial infections. This particular fungus exists in two distinct stages in its life cycle: yeast and hyphae. In this study, 20 signaling pathways associated with 177 proteins from <i>C. albicans</i> were identified to construct a PPI network. The core part of the network consisted of 165 proteins. Network topology analyses revealed that the formed PPI network is biologically robust and scale-free, with significant interactions between proteins through 19 252 shortest pathways. In this network, the top 10 hub proteins (RAS1, CDC42, HOG1, CPH1, STE11, EFG1, CEK1, HSP90, TEC1 and CST20) were identified using network analysis, which seem to be the most important proteins involved in different pathways for the development of pathogenesis and virulence. Modular analysis of the network resulted in top six sub-networks, three of which shared eight hub proteins. Ontology and functional enrichment analyses revealed that the majority of the proteins were associated with regulation of transcription by RNA polymerase II, plasma membrane and nucleic acid binding in biological processes, and cellular components and molecular functions, respectively. Enrichment analysis indicated that the proteins were mostly involved in oxidative phosphorylation and purine metabolism signaling pathways. We determined the complex web of signaling pathway involving proteins <i>via</i> PPI network analysis to unravel and decipher protein interactions within <i>C. albicans</i> to understand the complex pathogenesis processes for targeted therapeutic interferences using novel bioinformatics strategies.

Molecular OmicsVol. 21(4)
Shree Krishna Hospital (IN), Kinetic Art & Technology (United States) (US), Ansgar University College (NO), University of Kalyani (IN)
Openalex Percentile: Top 21%
Antifungal resistance and susceptibility
1.40
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