A high-quality Chromosome-level reference genome assembly of white-lipped deer (Przewalskium albirostris)
White-lipped deer (Przewalskium albirostris) is the sole species in the genus Przewalskium of the Cervidae family. And it is exclusively found in the Qinghai-Tibet Plateau, where it has evolved as a specialized deer on account of the extreme climates and geographical conditions. However, limited research on the genome of this species exists. Here, PacBio and Hi-C sequencing data were constructed to a high-quality Chromosome-level reference genome for the white-lipped deer. The assembly, totaling 2.99 GB, is composed of 34 chromosomes (32 autosomes and X, Y chromosomes), with a scaffold N50 length of 76.18 Mb. Furthermore, it achieved scores of 98.4% and 63.8 in Universal Single-Copy Ortholog (BUSCO) and quality value (QV), respectively. Subsequently, employing the egapx software for genome structural annotation, we identified a total of 21909 protein coding genes, annotating 21859 of them. The high-quality and completeness of our genome sequence and annotation was affirmed by these results. The assembly will significantly contribute to enhance the understanding of the adaptation mechanisms of the white-lipped deer to the extreme environments.
Authors
- Tongzuo Zhang (ORCID: https://orcid.org/0000-0001-5524-4262)
- Wei Luo (ORCID: https://orcid.org/0000-0002-5898-6971)
- Zhangqiang You
- Yuangang Yang (ORCID: https://orcid.org/0000-0003-2800-6861)
- Bin Li (ORCID: https://orcid.org/0009-0007-5259-1200)
- Peng Luo (ORCID: https://orcid.org/0000-0002-4926-4336)
- Bo Xu (ORCID: https://orcid.org/0000-0001-7683-2514)
Institutions
- Qinghai University (CN)
- Chinese Academy of Sciences (CN)
- Mianyang Normal University (CN)
- Xinjiang Institute of Ecology and Geography (CN)
- University of Chinese Academy of Sciences (CN)
Publication Details
- Journal
- Scientific Data
- Published
- 2025-05-01
- DOI
- https://doi.org/10.1038/s41597-025-04796-1
- Citations
- 1
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.81
Funders
- Natural Science Foundation of Qinghai