A high-quality Chromosome-level reference genome assembly of white-lipped deer (Przewalskium albirostris)

White-lipped deer (Przewalskium albirostris) is the sole species in the genus Przewalskium of the Cervidae family. And it is exclusively found in the Qinghai-Tibet Plateau, where it has evolved as a specialized deer on account of the extreme climates and geographical conditions. However, limited research on the genome of this species exists. Here, PacBio and Hi-C sequencing data were constructed to a high-quality Chromosome-level reference genome for the white-lipped deer. The assembly, totaling 2.99 GB, is composed of 34 chromosomes (32 autosomes and X, Y chromosomes), with a scaffold N50 length of 76.18 Mb. Furthermore, it achieved scores of 98.4% and 63.8 in Universal Single-Copy Ortholog (BUSCO) and quality value (QV), respectively. Subsequently, employing the egapx software for genome structural annotation, we identified a total of 21909 protein coding genes, annotating 21859 of them. The high-quality and completeness of our genome sequence and annotation was affirmed by these results. The assembly will significantly contribute to enhance the understanding of the adaptation mechanisms of the white-lipped deer to the extreme environments.

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Publication Details

Journal
Scientific Data
Published
2025-05-01
DOI
https://doi.org/10.1038/s41597-025-04796-1
Citations
1
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.81

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article

A high-quality Chromosome-level reference genome assembly of white-lipped deer (Przewalskium albirostris)

Tongzuo Zhang, Wei Luo, Zhangqiang You, Yuangang Yang et al.
1 citations
Scientific Data
Genomics and Phylogenetic Studies
0.81
article

A high-quality Chromosome-level reference genome assembly of white-lipped deer (Przewalskium albirostris)

Tongzuo Zhang, Wei Luo, Zhangqiang You, Yuangang Yang, Bin Li, Peng Luo, Bo Xu
article en
1 citations

Abstract

White-lipped deer (Przewalskium albirostris) is the sole species in the genus Przewalskium of the Cervidae family. And it is exclusively found in the Qinghai-Tibet Plateau, where it has evolved as a specialized deer on account of the extreme climates and geographical conditions. However, limited research on the genome of this species exists. Here, PacBio and Hi-C sequencing data were constructed to a high-quality Chromosome-level reference genome for the white-lipped deer. The assembly, totaling 2.99 GB, is composed of 34 chromosomes (32 autosomes and X, Y chromosomes), with a scaffold N50 length of 76.18 Mb. Furthermore, it achieved scores of 98.4% and 63.8 in Universal Single-Copy Ortholog (BUSCO) and quality value (QV), respectively. Subsequently, employing the egapx software for genome structural annotation, we identified a total of 21909 protein coding genes, annotating 21859 of them. The high-quality and completeness of our genome sequence and annotation was affirmed by these results. The assembly will significantly contribute to enhance the understanding of the adaptation mechanisms of the white-lipped deer to the extreme environments.

Scientific DataVol. 12(1)
Qinghai University (CN), Chinese Academy of Sciences (CN), Mianyang Normal University (CN), Xinjiang Institute of Ecology and Geography (CN), University of Chinese Academy of Sciences (CN)
Natural Science Foundation of Qinghai
Openalex Percentile: Top 29%
Genomics and Phylogenetic Studies
0.81
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