PICRUSt2-SC: an update to the reference database used for functional prediction within PICRUSt2
PICRUSt2 source code is freely available at https://github.com/picrust/picrust2 and at https://anaconda.org/bioconda/picrust2. The latest version of PICRUSt2 at the time of writing is also archived: https://doi.org/10.5281/zenodo.15119781. The PICRUSt2-SC database comes pre-installed with PICRUSt2 from version 2.6.0 onwards. Step-by-step instructions for making the updated database are at https://github.com/picrust/picrust2/wiki/Updating-the-PICRUSt2-database. All code used for the analyses and figures in this manuscript is at https://github.com/R-Wright-1/PICRUSt2-SC_application_note and https://doi.org/10.5281/zenodo.15119770.
Authors
- Robyn Wright (ORCID: https://orcid.org/0000-0003-0562-2610)
- Morgan G. I. Langille (ORCID: https://orcid.org/0000-0002-6604-3009)
Institutions
- Dalhousie University (CA)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-04-26
- DOI
- https://doi.org/10.1093/bioinformatics/btaf269
- Citations
- 30
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 24.18
Funders
- Alliance de recherche numérique du Canada
- Natural Sciences and Engineering Research Council of Canada