<i>Microbacterium chionoecetis</i> sp. nov. and <i>Agrococcus chionoecetis</i> sp. nov.: Novel Gut Bacteria from Red Snow Crab
Two yellow-coloured, Gram-stain-positive, oxidase-negative, aerobic, non-motile, and rod-shaped strains, labelled as ProA8<sup>T</sup> and ProA11<sup>T</sup>, were isolated from digestive tract of red snow crab (<i>Chionoecetes japonicus</i>). Strain ProA8<sup>T</sup> grow at temperature range of 15-35°C, while strain ProA11<sup>T</sup> grow at temperature range of 15-40°C. Phylogenetic and 16S rRNA gene sequence analysis revealed that strains ProA8<sup>T</sup> and ProA11<sup>T</sup> belonged to the genera <i>Microbacterium</i> and <i>Agrococcus</i>, respectively. Strain ProA8<sup>T</sup> was closely affiliated with <i>Microbacterium yannicii</i> JCM 18959<sup>T</sup> (98.8%) and strain ProA11<sup>T</sup> was most closely related to <i>Agrococcus baldri</i> IAM 15147<sup>T</sup> (98.9%). The genome sizes of ProA8<sup>T</sup> and ProA11<sup>T</sup> were 4,373,776 bp and 2,665,899 bp, with DNA G+C contents of 70.5% and 70.1%, respectively. The genomic relatedness values of ProA8<sup>T</sup> and ProA11<sup>T</sup> with their respective reference strains were <32.0% (for digital DNA-DNA hybridization) and <87.0% (for average nucleotide identity). Biosynthetic gene analysis showed the presence of genes for resorcinol production in ProA8<sup>T</sup> and ectoine biosynthesis in ProA11<sup>T</sup>, indicating ecological and biotechnological significance. Virulence analyses determined that strains ProA8<sup>T</sup> and ProA11<sup>T</sup> were non-pathogenic to humans, highlighting their safe application in biotechnological field. The major cellular fatty acids reported in ProA8<sup>T</sup> and ProA11<sup>T</sup> were anteiso-C<sub>15:0</sub>, iso-C<sub>16:0</sub>, and anteiso-C<sub>17:0</sub>. Overall, the polyphasic taxonomic data suggest that both strains ProA8<sup>T</sup> and ProA11<sup>T</sup> represent two novel species within the genera <i>Microbacterium</i> and <i>Agrococcus</i>, respectively. Accordingly, we propose the names <i>Microbacterium chionoecetis</i> sp. nov., with the type strain ProA8<sup>T</sup> (= KCTC 49861<sup>T</sup> = JCM 37392<sup>T</sup>) and <i>Agrococcus chionoecetis</i> sp. nov., with the type strain ProA11<sup>T</sup> (= KCTC 49958<sup>T</sup> = JCM 37393<sup>T</sup>).
Authors
- Sang-Eon Kim (ORCID: https://orcid.org/0000-0003-4408-3189)
- Dhiraj Kumar Chaudhary (ORCID: https://orcid.org/0000-0003-4845-3933)
- Hye-Jin Park (ORCID: https://orcid.org/0000-0002-2933-0770)
- Kyoung‐Ho Kim (ORCID: https://orcid.org/0000-0002-6297-7832)
Institutions
- Korea Institute of Ocean Science and Technology (KR)
- Pukyong National University (KR)
Publication Details
- Journal
- Journal of Microbiology and Biotechnology
- Published
- 2025-04-24
- DOI
- https://doi.org/10.4014/jmb.2412.12044
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Ministry of Oceans and Fisheries
- Korea Institute of Marine Science and Technology promotion