Structure of ice VII with Hirshfeld atom refinement

In the refinement of the crystal structures of ice, the best results obtained so far have been with neutron diffraction because the most troublemaking aspects are the hydrogen atoms. In nine out of twenty ice structures, the hydrogen atoms are disordered, which makes proper refinement more difficult. In our previous paper describing the structure of ice VI we proved that, using Hirshfeld atom refinement (HAR) based on synchrotron X-ray data, it is possible to obtain results comparable with those from neutron experiments. In this work, we investigate another structure of high-pressure disordered ice, cubo-ice (ice VII). Single crystals of cubo-ice were grown under pressure in diamond anvil cells. X-ray diffraction measurements were conducted at a synchrotron source facility (APS, University of Chicago, USA) as well as on our regular in-house laboratory diffractometer with Ag radiation. The data collected were further refined with HAR. Comparison of the structural parameters obtained with those derived from neutron diffraction showed very good agreement in terms of bond lengths and fairly good agreement in terms of hydrogen atom ADPs. We were also able to perform unconstrained refinements with various split-atom models.

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Publication Details

Journal
IUCrJ
Published
2025-04-25
DOI
https://doi.org/10.1107/s2052252525002581
Citations
1
Primary Topic
High-pressure geophysics and materials
Type
article
Field-Weighted Citation Impact
1.87

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Structure of ice VII with Hirshfeld atom refinement

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IUCrJ
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article

Structure of ice VII with Hirshfeld atom refinement

Vitali B. Prakapenka, Roman Gajda, Michał Leszek Chodkiewicz, Dongzhou Zhang, Krzysztof Woźniak, Phuong Nguyen
article en
1 citations

Abstract

In the refinement of the crystal structures of ice, the best results obtained so far have been with neutron diffraction because the most troublemaking aspects are the hydrogen atoms. In nine out of twenty ice structures, the hydrogen atoms are disordered, which makes proper refinement more difficult. In our previous paper describing the structure of ice VI we proved that, using Hirshfeld atom refinement (HAR) based on synchrotron X-ray data, it is possible to obtain results comparable with those from neutron experiments. In this work, we investigate another structure of high-pressure disordered ice, cubo-ice (ice VII). Single crystals of cubo-ice were grown under pressure in diamond anvil cells. X-ray diffraction measurements were conducted at a synchrotron source facility (APS, University of Chicago, USA) as well as on our regular in-house laboratory diffractometer with Ag radiation. The data collected were further refined with HAR. Comparison of the structural parameters obtained with those derived from neutron diffraction showed very good agreement in terms of bond lengths and fairly good agreement in terms of hydrogen atom ADPs. We were also able to perform unconstrained refinements with various split-atom models.

IUCrJVol. 12(3)
Argonne National Laboratory (US), University of Warsaw (PL)
National Science Foundation, U.S. Department of Energy, University of Chicago, European Commission, Fundacja na rzecz Nauki Polskiej, Narodowe Centrum Nauki, Narodowym Centrum Nauki, Uniwersytet Warszawski, Office of Science, European Regional Development Fund, Argonne National Laboratory
Openalex Percentile: Top 19%
High-pressure geophysics and materials
1.87
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