Formation of Ground-State Intermediate during Electronic Relaxation of Pyrimidine Nucleobases

Ultrafast electronic relaxation of nucleobases from the <sup>1</sup>ππ* state to the ground electronic state (S<sub>0</sub>) is crucial for the photostability of DNA and RNA. However, it has been suggested that electronic relaxation of pyrimidine nucleobases, nucleosides, and nucleotides in an aqueous environment generates an electronically excited intermediate state with a lifetime of tens to hundreds of picoseconds with a relatively high quantum yield (QY) of 0.2-0.5. The generation of such a long-lived excited state seems to be inconsistent with the photostability of these molecules. A recent extreme ultraviolet time-resolved photoelectron spectroscopy study by Miura et al. [<i>J. Am. Chem. Soc.</i> <b>2023</b>, 145 (6), 3369] reinvestigated this problem and revealed that the accurately determined QY for long-lived excited states is much too low to allow an electronically excited reaction intermediate to exist. In the present study, we investigated the nature of the reaction intermediate using ultraviolet and infrared transient absorption spectroscopy, along with quantum chemical calculations to show that the intermediate is in the S<sub>0</sub> state, and its infrared spectrum is compatible with a metastable twisted C═C species theoretically predicted by Park et al. [<i>J. Phys. Chem. Lett.</i> <b>2022</b>, 13 (30), 7072].

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Publication Details

Journal
Journal of the American Chemical Society
Published
2025-04-25
DOI
https://doi.org/10.1021/jacs.4c17415
Citations
7
Primary Topic
DNA and Nucleic Acid Chemistry
Type
article
Field-Weighted Citation Impact
5.64

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article

Formation of Ground-State Intermediate during Electronic Relaxation of Pyrimidine Nucleobases

Toshinori Suzuki, Srijon Ghosh, Shota Kamibashira, Yoshitaka Obara et al.
7 citations
Journal of the American Chemical Society
DNA and Nucleic Acid Chemistry
5.64
article

Formation of Ground-State Intermediate during Electronic Relaxation of Pyrimidine Nucleobases

Toshinori Suzuki, Srijon Ghosh, Shota Kamibashira, Yoshitaka Obara, Alexander Humeniuk, Shunsuke Adachi
article en
7 citations

Abstract

Ultrafast electronic relaxation of nucleobases from the <sup>1</sup>ππ* state to the ground electronic state (S<sub>0</sub>) is crucial for the photostability of DNA and RNA. However, it has been suggested that electronic relaxation of pyrimidine nucleobases, nucleosides, and nucleotides in an aqueous environment generates an electronically excited intermediate state with a lifetime of tens to hundreds of picoseconds with a relatively high quantum yield (QY) of 0.2-0.5. The generation of such a long-lived excited state seems to be inconsistent with the photostability of these molecules. A recent extreme ultraviolet time-resolved photoelectron spectroscopy study by Miura et al. [<i>J. Am. Chem. Soc.</i> <b>2023</b>, 145 (6), 3369] reinvestigated this problem and revealed that the accurately determined QY for long-lived excited states is much too low to allow an electronically excited reaction intermediate to exist. In the present study, we investigated the nature of the reaction intermediate using ultraviolet and infrared transient absorption spectroscopy, along with quantum chemical calculations to show that the intermediate is in the S<sub>0</sub> state, and its infrared spectrum is compatible with a metastable twisted C═C species theoretically predicted by Park et al. [<i>J. Phys. Chem. Lett.</i> <b>2022</b>, 13 (30), 7072].

Journal of the American Chemical SocietyVol. 147(18)
Kyoto University (JP)
Japan Society for the Promotion of Science
Openalex Percentile: Top 4%
DNA and Nucleic Acid Chemistry
5.64
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