Growth rate controls the sensitivity of gene regulatory circuits

Microbes adapt to their environments using gene regulatory switches that sense environmental signals and induce target genes in response. Mathematical modeling predicts that, because growth rate sets the intracellular dilution rate, the sensitivity of regulatory switches to chemical cues systematically decreases with growth rate. We experimentally validate that the concentration of inducer required to activate <i>E. coli</i>'s <i>lac</i> operon increases quadratically with growth rate when varying nutrients but is invariant when varying growth rate through translation inhibition. We further establish that this growth-coupled sensitivity (GCS) allows bacteria to implement concentration-dependent sugar preferences, in which a new carbon source is used only if its concentration is sufficient to improve upon the current growth rate. Using microfluidics in combination with time-lapse microscopy, we validate this prediction at the single-cell level using mixtures of glucose and lactose. Overall, GCS causes cells to automatically become more sensitive to environmental signals when their growth rate decreases.

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Publication Details

Journal
Science Advances
Published
2025-04-25
DOI
https://doi.org/10.1126/sciadv.adu9279
Citations
7
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
5.64
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article

Growth rate controls the sensitivity of gene regulatory circuits

Erik van Nimwegen, Thomas Julou, Daan H. de Groot, Théo Gervais
7 citations
Science Advances
Gene Regulatory Network Analysis
5.64
article

Growth rate controls the sensitivity of gene regulatory circuits

Erik van Nimwegen, Thomas Julou, Daan H. de Groot, Théo Gervais
article en
7 citations

Abstract

Microbes adapt to their environments using gene regulatory switches that sense environmental signals and induce target genes in response. Mathematical modeling predicts that, because growth rate sets the intracellular dilution rate, the sensitivity of regulatory switches to chemical cues systematically decreases with growth rate. We experimentally validate that the concentration of inducer required to activate <i>E. coli</i>'s <i>lac</i> operon increases quadratically with growth rate when varying nutrients but is invariant when varying growth rate through translation inhibition. We further establish that this growth-coupled sensitivity (GCS) allows bacteria to implement concentration-dependent sugar preferences, in which a new carbon source is used only if its concentration is sufficient to improve upon the current growth rate. Using microfluidics in combination with time-lapse microscopy, we validate this prediction at the single-cell level using mixtures of glucose and lactose. Overall, GCS causes cells to automatically become more sensitive to environmental signals when their growth rate decreases.

Science AdvancesVol. 11(17)
SIB Swiss Institute of Bioinformatics (CH), University of Basel (CH)
Openalex Percentile: Top 4%
Gene Regulatory Network Analysis
5.64
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