Synthesis, Characterization, Molecular Docking, and DFT Studies of 2,3,5-Trisubstituted-1,3,4-Oxadiazol-3(2H)-yl Methanone Derivatives

2, 3, 5-Trisubstituted-1, 3, 4-Oxadiazol-3-(2H)-yl methanone derivatives are synthesized and characterized by spectral methods such as IR, 1 H NMR, [Formula: see text]C NMR and MS. The molecular docking study was conducted with assorted bacterial and fungal target proteins (PDB Id: 2ZCO, 1SNN, 1CVU, 3OSV, 6IV7 and 7BLY) to study the binding interactions of synthesized compounds. Scaffold 2[Formula: see text] exhibited the best docking scores of –10.5, –10.0, –9.5 and –10.5 kcal/mol against target proteins 1CVU, 2ZCO, 3OSV and 7BLY, respectively. Further, synthesized analogs showed good to moderate anti-bacterial activity against Staphylococcus aureus, Bacillus subtilis, Escherichia coli and Pseudomonas aeruginosa; and anti-fungal activity againstAspergillus nigerandCandida albicans. Remarkably, 2[Formula: see text] and 2[Formula: see text] showed auspicious anti-fungal and anti-bacterial activity compared to other molecules. The DFT study was carried out at the level of B3LYP/6-31G (s) to obtain the optimized geometry of molecules, frontier molecular orbital energies, molecular electrostatic potential plots and global reactivity parameters ([Formula: see text] and [Formula: see text] to explore their structural and electronic features. Compound 2[Formula: see text] exhibited the highest reactivity ([Formula: see text]: 1.454 eV) and compound 2[Formula: see text] exhibited the lowest toxicity ([Formula: see text]: 1.401 eV) among all analogs. Overall, these findings indicate that compounds 2[Formula: see text], 2[Formula: see text] and 2[Formula: see text] would be prominent intrants for further studies concerning research and development as they exhibit good anti-microbial activity, best docking scores and favorable [Formula: see text], [Formula: see text] and [Formula: see text] parameters.

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Journal
Journal of Computational Biophysics and Chemistry
Published
2025-04-24
DOI
https://doi.org/10.1142/s2737416525500528
Primary Topic
Synthesis and Characterization of Heterocyclic Compounds
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article
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article

Synthesis, Characterization, Molecular Docking, and DFT Studies of 2,3,5-Trisubstituted-1,3,4-Oxadiazol-3(2H)-yl Methanone Derivatives

Suraj N. Mali, Shailesh S. Gurav, Santosh V. Raskar, Krishnakant Waghmode
Journal of Computational Biophysics and Chemistry
Synthesis and Characterization of Heterocyclic Compounds
article

Synthesis, Characterization, Molecular Docking, and DFT Studies of 2,3,5-Trisubstituted-1,3,4-Oxadiazol-3(2H)-yl Methanone Derivatives

Suraj N. Mali, Shailesh S. Gurav, Santosh V. Raskar, Krishnakant Waghmode
article en

Abstract

2, 3, 5-Trisubstituted-1, 3, 4-Oxadiazol-3-(2H)-yl methanone derivatives are synthesized and characterized by spectral methods such as IR, 1 H NMR, [Formula: see text]C NMR and MS. The molecular docking study was conducted with assorted bacterial and fungal target proteins (PDB Id: 2ZCO, 1SNN, 1CVU, 3OSV, 6IV7 and 7BLY) to study the binding interactions of synthesized compounds. Scaffold 2[Formula: see text] exhibited the best docking scores of –10.5, –10.0, –9.5 and –10.5 kcal/mol against target proteins 1CVU, 2ZCO, 3OSV and 7BLY, respectively. Further, synthesized analogs showed good to moderate anti-bacterial activity against Staphylococcus aureus, Bacillus subtilis, Escherichia coli and Pseudomonas aeruginosa; and anti-fungal activity againstAspergillus nigerandCandida albicans. Remarkably, 2[Formula: see text] and 2[Formula: see text] showed auspicious anti-fungal and anti-bacterial activity compared to other molecules. The DFT study was carried out at the level of B3LYP/6-31G (s) to obtain the optimized geometry of molecules, frontier molecular orbital energies, molecular electrostatic potential plots and global reactivity parameters ([Formula: see text] and [Formula: see text] to explore their structural and electronic features. Compound 2[Formula: see text] exhibited the highest reactivity ([Formula: see text]: 1.454 eV) and compound 2[Formula: see text] exhibited the lowest toxicity ([Formula: see text]: 1.401 eV) among all analogs. Overall, these findings indicate that compounds 2[Formula: see text], 2[Formula: see text] and 2[Formula: see text] would be prominent intrants for further studies concerning research and development as they exhibit good anti-microbial activity, best docking scores and favorable [Formula: see text], [Formula: see text] and [Formula: see text] parameters.

Journal of Computational Biophysics and ChemistryVol. 25(03)
GlaxoSmithKline (India) (IN), Ciência Viva (PT), D.Y. Patil University (IN)
Openalex Percentile: Top 93%
Synthesis and Characterization of Heterocyclic Compounds
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