MSTmap Online: enhanced usability, visualization, and accessibility

Genetic linkage maps are an essential tool in population genetics and plant breeding research, yet user-friendly online tools for constructing and visualizing them remain scarce. MSTmap Online addresses this gap by providing a modern, accessible platform for generating high-quality genetic linkage maps from genotypic data. The web server quickly computes linkage groups using the MSTmap algorithm and generates detailed output files, including publication-ready PDF visualizations of linkage groups. The server supports bookmarking and asynchronous processing, allowing users to revisit their results at a later time. A companion Python library for MSTmap Online enables seamless integration into custom analysis pipelines. MSTmap Online is free and open to all users with no login requirement at https://mstmap.org. The companion Python library is available at https://pypi.org/project/mstmap/.

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Publication Details

Journal
Nucleic Acids Research
Published
2025-04-23
DOI
https://doi.org/10.1093/nar/gkaf332
Primary Topic
Genetic Mapping and Diversity in Plants and Animals
Type
article
Field-Weighted Citation Impact
0.00

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article

MSTmap Online: enhanced usability, visualization, and accessibility

Amirsadra Mohseni, Stefano Lonardi
Nucleic Acids Research
Genetic Mapping and Diversity in Plants and Animals
article

MSTmap Online: enhanced usability, visualization, and accessibility

Amirsadra Mohseni, Stefano Lonardi
article en

Abstract

Genetic linkage maps are an essential tool in population genetics and plant breeding research, yet user-friendly online tools for constructing and visualizing them remain scarce. MSTmap Online addresses this gap by providing a modern, accessible platform for generating high-quality genetic linkage maps from genotypic data. The web server quickly computes linkage groups using the MSTmap algorithm and generates detailed output files, including publication-ready PDF visualizations of linkage groups. The server supports bookmarking and asynchronous processing, allowing users to revisit their results at a later time. A companion Python library for MSTmap Online enables seamless integration into custom analysis pipelines. MSTmap Online is free and open to all users with no login requirement at https://mstmap.org. The companion Python library is available at https://pypi.org/project/mstmap/.

Nucleic Acids ResearchVol. 53(W1)
University of California, Riverside (US)
National Science Foundation, National Institutes of Health, Division of Chemical, Bioengineering, Environmental, and Transport Systems
Openalex Percentile: Top 90%
Genetic Mapping and Diversity in Plants and Animals
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