Identification of novel long non-coding RNA involved in Sertoli cell of non-obstructive azoospermia based on microarray and bioinformatics analysis

Non-obstructive azoospermia (NOA) is a severe form of male infertility, yet its underlying molecular mechanisms remain poorly understood. This study aimed to identify key regulatory non-coding RNAs (ncRNAs) and hub genes associated with NOA through an integrative bioinformatics approach. Using microarray analysis, we examined 4956 ncRNAs and identified 29 differentially expressed ncRNAs (14 upregulated, 15 downregulated) in NOA compared to healthy individuals. Co-expression analysis revealed significant interactions between lncRNAs, miRNAs, and mRNAs, predicting 31 target mRNAs within the regulatory network. Further, single-cell transcriptomic analysis identified four pivotal hub genes in NOA Sertoli cells: CLTC, XIAP, and DHFR (upregulated) and STMN1 (downregulated). Functional enrichment analysis highlighted critical pathways, including mitotic spindle organization and phosphatase activity, suggesting their involvement in NOA pathophysiology. Our findings provide novel insights into the molecular mechanisms underlying NOA and propose potential biomarkers for improved diagnosis and therapeutic strategies.

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Publication Details

Journal
Genomics
Published
2025-04-23
DOI
https://doi.org/10.1016/j.ygeno.2025.111046
Citations
10
Primary Topic
Cancer-related molecular mechanisms research
Type
article
Field-Weighted Citation Impact
9.36

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article

Identification of novel long non-coding RNA involved in Sertoli cell of non-obstructive azoospermia based on microarray and bioinformatics analysis

Danial Hashemi Karoii, Ali Shakeri Abroudi, Hossein Azizi, Thomas Skutella et al.
10 citations
Genomics
Cancer-related molecular mechanisms research
9.36
article

Identification of novel long non-coding RNA involved in Sertoli cell of non-obstructive azoospermia based on microarray and bioinformatics analysis

Danial Hashemi Karoii, Ali Shakeri Abroudi, Hossein Azizi, Thomas Skutella, Melika Djamali, Maryam Darvar
article en
10 citations

Abstract

Non-obstructive azoospermia (NOA) is a severe form of male infertility, yet its underlying molecular mechanisms remain poorly understood. This study aimed to identify key regulatory non-coding RNAs (ncRNAs) and hub genes associated with NOA through an integrative bioinformatics approach. Using microarray analysis, we examined 4956 ncRNAs and identified 29 differentially expressed ncRNAs (14 upregulated, 15 downregulated) in NOA compared to healthy individuals. Co-expression analysis revealed significant interactions between lncRNAs, miRNAs, and mRNAs, predicting 31 target mRNAs within the regulatory network. Further, single-cell transcriptomic analysis identified four pivotal hub genes in NOA Sertoli cells: CLTC, XIAP, and DHFR (upregulated) and STMN1 (downregulated). Functional enrichment analysis highlighted critical pathways, including mitotic spindle organization and phosphatase activity, suggesting their involvement in NOA pathophysiology. Our findings provide novel insights into the molecular mechanisms underlying NOA and propose potential biomarkers for improved diagnosis and therapeutic strategies.

GenomicsVol. 117(3)
Heidelberg University (DE), University of Tehran (IR), Islamic Azad University Medical Branch of Tehran (IR), University Hospital Heidelberg (DE), Islamic Azad University Sari Branch (IR), Amol University of Special Modern Technologies (IR), Qaemshahr Islamic Azad University (IR)
Amol University of Technology
Zero hunger
Openalex Percentile: Top 2%
Cancer-related molecular mechanisms research
9.36
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