Resource competition-driven bistability and stochastic switching amplify gene expression noise

Although the impact of resource competition on the deterministic behavior of synthetic gene circuits has been studied, its effects on gene expression noise remain obscure. In this work, we systematically analyze the role of resource competition in noise propagation within a genetic inhibition cascade circuit. We found that resource competition amplifies gene expression noise by introducing unexpected bistability and stochastic switching between the two stable states. This emergent bistability, driven by resource competition-mediated double negative feedback, allows one gene to dominate expression while suppressing the other in a "winner-takes-all" behavior. Our findings highlight the critical role of resource competition in shaping the noise dynamics and its propagation, underscoring the importance of considering these effects when designing and controlling synthetic circuits.

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Publication Details

Journal
PLoS Computational Biology
Published
2025-04-23
DOI
https://doi.org/10.1371/journal.pcbi.1012931
Citations
3
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
2.42

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article

Resource competition-driven bistability and stochastic switching amplify gene expression noise

Xiao‐Jun Tian, Hanah Goetz, Rong Zhang, Xiao Wang
3 citations
PLoS Computational Biology
Gene Regulatory Network Analysis
2.42
article

Resource competition-driven bistability and stochastic switching amplify gene expression noise

Xiao‐Jun Tian, Hanah Goetz, Rong Zhang, Xiao Wang
article en
3 citations

Abstract

Although the impact of resource competition on the deterministic behavior of synthetic gene circuits has been studied, its effects on gene expression noise remain obscure. In this work, we systematically analyze the role of resource competition in noise propagation within a genetic inhibition cascade circuit. We found that resource competition amplifies gene expression noise by introducing unexpected bistability and stochastic switching between the two stable states. This emergent bistability, driven by resource competition-mediated double negative feedback, allows one gene to dominate expression while suppressing the other in a "winner-takes-all" behavior. Our findings highlight the critical role of resource competition in shaping the noise dynamics and its propagation, underscoring the importance of considering these effects when designing and controlling synthetic circuits.

PLoS Computational BiologyVol. 21(4)
Arizona State University (US)
National Institute of Nursing Research
Decent work and economic growth
Openalex Percentile: Top 12%
Gene Regulatory Network Analysis
2.42
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