Estimation of microbial biomass based on water-extractable organic matter from air-dried soils from Japanese forests and pasture

Abstract Water-extractable organic matter (WEOM) obtained from air-dried soil samples can be used to estimate microbial biomass instead of chloroform fumigation extraction (CFE) using fresh, moist soils and toxic solvents. However, the accuracy of such WEOM-based estimates has not been evaluated. We evaluated relationships between WEOM measurements obtained from air-dried soils and microbial biomass measurements obtained through CFE based on 50 soil samples from 10 soil profiles in Japanese forests and pasture. The amount of water-extractable organic carbon (C) obtained from air-dried soils corresponded to 31% of microbial biomass C, demonstrating a strong correlation (squared correlation coefficients ( R 2 ) = 0.94, statistical probability ( P ) < 0.01), whereas the amount of water-extractable total nitrogen (N) (WETN) and microbial biomass N was weakly correlated ( R 2 = 0.56, P < 0.01). Moreover, the relationships with soil physiochemical properties were similar between WEOC and microbial biomass C ( R 2 = 1.00, root mean square error (RMSE) = 0.04), whereas those were less similar between WETN and microbial biomass N ( R 2 = 0.73, RMSE = 0.28). The decoupling of WETN for air-dried soils and microbial biomass N was attributed to differences in the amounts of inorganic N compounds (NO 3 – and NH 4 + ) in K 2 SO 4 extracts from chloroform-fumigated and unfumigated soils compared to those in water extracts from air-dried soils. These results support our hypothesis that WEOM originates from and is a valid estimate of microbial biomass, particularly for C, offering a solution to the practical difficulties involved in measuring microbial biomass using the CFE. Nevertheless, a caution should be noted that this novel method is still empirical estimation without less mechanistic or process driven explanation. Thus, there is a need to validate this new estimation in other sets of soil samples.

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Publication Details

Journal
Discover Soil.
Published
2025-04-23
DOI
https://doi.org/10.1007/s44378-025-00053-4
Citations
1
Primary Topic
Soil Carbon and Nitrogen Dynamics
Type
article
Field-Weighted Citation Impact
1.19

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Estimation of microbial biomass based on water-extractable organic matter from air-dried soils from Japanese forests and pasture

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Discover Soil.
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article

Estimation of microbial biomass based on water-extractable organic matter from air-dried soils from Japanese forests and pasture

Mariko Atarashi-Andoh, Jun Koarashi, Hirohiko Nagano, Syuntaro Hiradate, Yuri Suzuki, Zhibin Guo, Yuki Kanda
article en
1 citations

Abstract

Abstract Water-extractable organic matter (WEOM) obtained from air-dried soil samples can be used to estimate microbial biomass instead of chloroform fumigation extraction (CFE) using fresh, moist soils and toxic solvents. However, the accuracy of such WEOM-based estimates has not been evaluated. We evaluated relationships between WEOM measurements obtained from air-dried soils and microbial biomass measurements obtained through CFE based on 50 soil samples from 10 soil profiles in Japanese forests and pasture. The amount of water-extractable organic carbon (C) obtained from air-dried soils corresponded to 31% of microbial biomass C, demonstrating a strong correlation (squared correlation coefficients ( R 2 ) = 0.94, statistical probability ( P ) < 0.01), whereas the amount of water-extractable total nitrogen (N) (WETN) and microbial biomass N was weakly correlated ( R 2 = 0.56, P < 0.01). Moreover, the relationships with soil physiochemical properties were similar between WEOC and microbial biomass C ( R 2 = 1.00, root mean square error (RMSE) = 0.04), whereas those were less similar between WETN and microbial biomass N ( R 2 = 0.73, RMSE = 0.28). The decoupling of WETN for air-dried soils and microbial biomass N was attributed to differences in the amounts of inorganic N compounds (NO 3 – and NH 4 + ) in K 2 SO 4 extracts from chloroform-fumigated and unfumigated soils compared to those in water extracts from air-dried soils. These results support our hypothesis that WEOM originates from and is a valid estimate of microbial biomass, particularly for C, offering a solution to the practical difficulties involved in measuring microbial biomass using the CFE. Nevertheless, a caution should be noted that this novel method is still empirical estimation without less mechanistic or process driven explanation. Thus, there is a need to validate this new estimation in other sets of soil samples.

Discover Soil.Vol. 2(1)
Japan Atomic Energy Agency (JP), Kyushu University (JP), Niigata Institute of Technology (JP), Anhui Academy of Agricultural Sciences (CN), Niigata University (JP)
Ministry of Science and Technology of the People's Republic of China, Japan Society for the Promotion of Science, Japan Atomic Energy Agency
Openalex Percentile: Top 22%
Soil Carbon and Nitrogen Dynamics
1.19
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