Nitration at tyrosine 61 residue of <i>Macrophomina phaseolina</i> secretory glucanase brings a conformational change through a lock-unlock mechanism

Nitration of Tyrosine residue, is a footprint of its preceding nitrosative stress conditions that make nitric oxide-derived oxidants abundant. Such a post-translational chemical modification, as byproduct of a stressed condition, could be an onset of a functional pathway. <i>Macrophomina phaseolina</i>, which is a global devastating necrotrophic fungal pathogen, is hereby reported to have at least nine tyrosine nitrated proteins in its secretome; among them Glucanase is an important virulence secretory protein that gets nitrated at Y61. The immediate impact on the Glucanase is likely to be a perturbation on the protein itself, which would prepare the protein to function, i.e. structurally ready to recognize binding partners which could not get recognized otherwise. Y61 nitration stabilizes the enzyme's structure, particularly, its central channel within the enzyme's core. Its mechanical consequences operate at both local and global scales. The key driving factor is a positional switch of Y61 which is triggered by charge-charge repulsion between D63 and Y61 upon nitration. This switching is responsible for a critical 'lock-unlock' mechanism at the upper junction of the channel that regulates solvent exposure, underscoring Y61's pivotal role as a gating residue for the channel. While it's 'gating-in' at the junction unlocks and distorts the channel shape, its 'gating-out' locks the channel into a well-guarded conformation systematically regulating its overall exposure that can potentiate precise substrate routing towards the active site. The findings suggest that Y61 nitration-induced conformational changes have the potential to drive enzyme activation, representing a novel insight into the behavior of <i>M. phaseolina</i> glucanase.

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Journal
Journal of Biomolecular Structure and Dynamics
Published
2025-04-23
DOI
https://doi.org/10.1080/07391102.2025.2494845
Primary Topic
Pancreatic function and diabetes
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article
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article

Nitration at tyrosine 61 residue of Macrophomina phaseolina secretory glucanase brings a conformational change through a lock-unlock mechanism

Sanjay Ghosh, Nilanjan Sinha, Shubhra Ghosh Dastidar, Nibedita Ray Chaudhuri
Journal of Biomolecular Structure and Dynamics
Pancreatic function and diabetes
article

Nitration at tyrosine 61 residue of Macrophomina phaseolina secretory glucanase brings a conformational change through a lock-unlock mechanism

Sanjay Ghosh, Nilanjan Sinha, Shubhra Ghosh Dastidar, Nibedita Ray Chaudhuri
article en

Abstract

Nitration of Tyrosine residue, is a footprint of its preceding nitrosative stress conditions that make nitric oxide-derived oxidants abundant. Such a post-translational chemical modification, as byproduct of a stressed condition, could be an onset of a functional pathway. <i>Macrophomina phaseolina</i>, which is a global devastating necrotrophic fungal pathogen, is hereby reported to have at least nine tyrosine nitrated proteins in its secretome; among them Glucanase is an important virulence secretory protein that gets nitrated at Y61. The immediate impact on the Glucanase is likely to be a perturbation on the protein itself, which would prepare the protein to function, i.e. structurally ready to recognize binding partners which could not get recognized otherwise. Y61 nitration stabilizes the enzyme's structure, particularly, its central channel within the enzyme's core. Its mechanical consequences operate at both local and global scales. The key driving factor is a positional switch of Y61 which is triggered by charge-charge repulsion between D63 and Y61 upon nitration. This switching is responsible for a critical 'lock-unlock' mechanism at the upper junction of the channel that regulates solvent exposure, underscoring Y61's pivotal role as a gating residue for the channel. While it's 'gating-in' at the junction unlocks and distorts the channel shape, its 'gating-out' locks the channel into a well-guarded conformation systematically regulating its overall exposure that can potentiate precise substrate routing towards the active site. The findings suggest that Y61 nitration-induced conformational changes have the potential to drive enzyme activation, representing a novel insight into the behavior of <i>M. phaseolina</i> glucanase.

Journal of Biomolecular Structure and DynamicsVol. 43(18)
University of Calcutta (IN), Bose Institute (IN)
Department of Biotechnology, Government of West Bengal
Openalex Percentile: Top 86%
Pancreatic function and diabetes
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