SEHG: Bridging Interpretability and Prediction in Self-Explainable Heterogeneous Graph Neural Networks

Heterogeneous Graph Neural Networks (HGNNs) are extensively applied in modeling web-based applications that involve heterogeneous graph structures. Explanation models for HGNNs aim to address their ''black box'' nature. Enhancing the interpretability of HGNNs leads to a better understanding and can potentially improve predictive performance. However, existing post-hoc HGNN explanation methods cannot impact the HGNN's predictions. Self-explainable homogeneous models also perform poorly on heterogeneous graphs. To address these challenges, we present a Self-Explainable Heterogeneous Graph Neural Network (SEHG), a novel architecture that integrates explanation generation into the learning process of HGNN through two alternative stages. The first stage focuses on producing high-quality explanations while providing predictions alongside. The second stage enhances prediction accuracy by a contrastive learning strategy. Unlike the current methods that rely on manually defined metapaths for structural explanations, SEHG generates important structure and feature explanations by learnable heterogeneous masks. To ensure high-quality and sparsity explanation, these masks are regulated by a uniquely designed range-based penalty during training. Moreover, we introduce HetBA, a collection of synthetic heterogeneous datasets designed to quantify and visualize explanations or heterogeneous graphs. Extensive experiments demonstrate the effectiveness of SEHG, which surpasses strong baselines in real-world node classification tasks by notable margins of up to 3.91%. SEHG also achieves state-of-the-art performance on synthetic datasets with improvement of up to 9.44%, and records the highest fidelity scores in explanation tasks, improving by up to 46.57%. To our knowledge, SEHG is a pioneering self-explainable HGNN framework that achieves state-of-the-art performance on both heterogeneous graph explanation and prediction tasks.

Authors

Institutions

Publication Details

Published
2025-04-22
DOI
https://doi.org/10.1145/3696410.3714661
Citations
2
Primary Topic
Advanced Graph Neural Networks
Type
article
Field-Weighted Citation Impact
4.96

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

SEHG: Bridging Interpretability and Prediction in Self-Explainable Heterogeneous Graph Neural Networks

Linyuan Lü, Chengpei Xu, Wenhao Zhou, Zhaohong Jia et al.
2 citations
Advanced Graph Neural Networks
4.96
article

SEHG: Bridging Interpretability and Prediction in Self-Explainable Heterogeneous Graph Neural Networks

Linyuan Lü, Chengpei Xu, Wenhao Zhou, Zhaohong Jia, Junfeng Fang, Feng Xia, Xiuyang Wu, Zhenhua Huang, Y. Li
article en
2 citations

Abstract

Heterogeneous Graph Neural Networks (HGNNs) are extensively applied in modeling web-based applications that involve heterogeneous graph structures. Explanation models for HGNNs aim to address their ''black box'' nature. Enhancing the interpretability of HGNNs leads to a better understanding and can potentially improve predictive performance. However, existing post-hoc HGNN explanation methods cannot impact the HGNN's predictions. Self-explainable homogeneous models also perform poorly on heterogeneous graphs. To address these challenges, we present a Self-Explainable Heterogeneous Graph Neural Network (SEHG), a novel architecture that integrates explanation generation into the learning process of HGNN through two alternative stages. The first stage focuses on producing high-quality explanations while providing predictions alongside. The second stage enhances prediction accuracy by a contrastive learning strategy. Unlike the current methods that rely on manually defined metapaths for structural explanations, SEHG generates important structure and feature explanations by learnable heterogeneous masks. To ensure high-quality and sparsity explanation, these masks are regulated by a uniquely designed range-based penalty during training. Moreover, we introduce HetBA, a collection of synthetic heterogeneous datasets designed to quantify and visualize explanations or heterogeneous graphs. Extensive experiments demonstrate the effectiveness of SEHG, which surpasses strong baselines in real-world node classification tasks by notable margins of up to 3.91%. SEHG also achieves state-of-the-art performance on synthetic datasets with improvement of up to 9.44%, and records the highest fidelity scores in explanation tasks, improving by up to 46.57%. To our knowledge, SEHG is a pioneering self-explainable HGNN framework that achieves state-of-the-art performance on both heterogeneous graph explanation and prediction tasks.

University of Science and Technology of China (CN), Guangdong University of Technology (CN), Anhui University (CN), National University of Singapore (SG), UNSW Sydney (AU), RMIT University (AU)
National Natural Science Foundation of China
Openalex Percentile: Top 6%
Advanced Graph Neural Networks
4.96
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.