Triangle Matters! TopDyG: Topology-aware Transformer for Link Prediction on Dynamic Graphs

Dynamic graph link prediction is widely utilized in the complex web of the real world, such as social networks, citation networks, recommendation systems, etc. Recent Transformer-based link prediction methods on dynamic graphs not only fail to model the fine-grained structures such as triangles with the vanilla Transformers in the graph serialization process, but also amplify the imbalanced distribution of graphs because of their over-estimation of high-degree nodes. To tackle these issues, we propose a Topology-aware Transformer on Dynamic Graph (TopDyG) for link prediction, consisting of a topology injected Transformer (Ti-Transformer) and a mutual information learning (Mi-Learning). The Ti-Transformer explores the explicit structure of serialized graphs, capturing the topological features. The Mi-Learning mines the relationship between nodes by modeling the mutual information with a prior knowledge, alleviating the over-estimation of high-degree nodes when applying the Transformer-based models for the dynamic graph link prediction task. Extensive experiments on four public datasets containing both transductive and inductive settings present the superiority of our proposal. In particular, TopDyG presents an improvement of 43.27% and 28.75% against the state-of-the-art baselines in terms of NDCG and Jaccard, respectively. The advantages are especially obvious on the high-density graphs.

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Published
2025-04-22
DOI
https://doi.org/10.1145/3696410.3714564
Primary Topic
Advanced Graph Neural Networks
Type
article
Field-Weighted Citation Impact
0.00

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article

Triangle Matters! TopDyG: Topology-aware Transformer for Link Prediction on Dynamic Graphs

Honghui Chen, Zhiqiang Pan, Chonghao Chen, Jianming Zheng et al.
Advanced Graph Neural Networks
article

Triangle Matters! TopDyG: Topology-aware Transformer for Link Prediction on Dynamic Graphs

Honghui Chen, Zhiqiang Pan, Chonghao Chen, Jianming Zheng, Fei Cai, Xin Zhang, Wanyu Chen
article en

Abstract

Dynamic graph link prediction is widely utilized in the complex web of the real world, such as social networks, citation networks, recommendation systems, etc. Recent Transformer-based link prediction methods on dynamic graphs not only fail to model the fine-grained structures such as triangles with the vanilla Transformers in the graph serialization process, but also amplify the imbalanced distribution of graphs because of their over-estimation of high-degree nodes. To tackle these issues, we propose a Topology-aware Transformer on Dynamic Graph (TopDyG) for link prediction, consisting of a topology injected Transformer (Ti-Transformer) and a mutual information learning (Mi-Learning). The Ti-Transformer explores the explicit structure of serialized graphs, capturing the topological features. The Mi-Learning mines the relationship between nodes by modeling the mutual information with a prior knowledge, alleviating the over-estimation of high-degree nodes when applying the Transformer-based models for the dynamic graph link prediction task. Extensive experiments on four public datasets containing both transductive and inductive settings present the superiority of our proposal. In particular, TopDyG presents an improvement of 43.27% and 28.75% against the state-of-the-art baselines in terms of NDCG and Jaccard, respectively. The advantages are especially obvious on the high-density graphs.

National University of Defense Technology (CN)
National Natural Science Foundation of China, National University of Defense Technology
Openalex Percentile: Top 96%
Advanced Graph Neural Networks
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Triangle Matters! TopDyG: Topology-aware Transformer for Link Prediction on Dynamic Graphs — Honghui Chen, Zhiqiang Pan, et al. · (2025) | TGRS Research Map | TGRS