Exploration of the mechanism of quercetin against GDM based on network pharmacology and molecular docking

Gestational diabetes mellitus (GDM) is among the most common complications in pregnancy, endangering both the mother and the fetus. Quercetin demonstrated anti-hyperglycemic effects. Our research aimed to probe the mechanism of quercetin in treating GDM. The GEO, CTD, and GeneCard database were utilized to screen out differentially expressed genes in GDM placental tissues. Then, the PPI network was constructed using the STRING database. Next, the target genes of quercetin were predicted using CTD, SwissTarget, and Super-PRED database. Subsequently, Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were performed to analyze quercetin targeting GDM-related genes. Furthermore, the signal pathway between GDM and quercetin was performed. Finally, Autodock vina software was utilized for molecular docking simulation while PyMOL and Discovery Studio were applied to visually display the 3D and 2D structure between GDM and quercetin. A total of 296 genes relevant to GDM with intersections in the three databases were screened by Venn diagram intersections. GO and KEGG analysis indicated that GDM was involved in multiple signaling pathways. Then, 42 targets of quercetin on GDM were screened, including 9 core targets. 2 major signaling pathways played critical roles in the treatment of GDM with quercetin. The molecular docking data showed that the molecular docking affinity of quercetin with 9 core genes was less than −5 Kcal/mol, which suggested that the binding between molecules was relatively stable. Quercetin in the treatment of GDM has the characteristics of multi-target and multi-pathway.

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Publication Details

Journal
Letters in Drug Design & Discovery
Published
2025-01-01
DOI
https://doi.org/10.1016/j.lddd.2025.100004
Citations
1
Primary Topic
Nuclear Receptors and Signaling
Type
article
Field-Weighted Citation Impact
0.91
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article

Exploration of the mechanism of quercetin against GDM based on network pharmacology and molecular docking

Y.K. Hong, Jinghai Chen, Jun Li, Yingying Cai et al.
1 citations
Letters in Drug Design & Discovery
Nuclear Receptors and Signaling
0.91
article

Exploration of the mechanism of quercetin against GDM based on network pharmacology and molecular docking

Y.K. Hong, Jinghai Chen, Jun Li, Yingying Cai, Xun Lin
article en
1 citations

Abstract

Gestational diabetes mellitus (GDM) is among the most common complications in pregnancy, endangering both the mother and the fetus. Quercetin demonstrated anti-hyperglycemic effects. Our research aimed to probe the mechanism of quercetin in treating GDM. The GEO, CTD, and GeneCard database were utilized to screen out differentially expressed genes in GDM placental tissues. Then, the PPI network was constructed using the STRING database. Next, the target genes of quercetin were predicted using CTD, SwissTarget, and Super-PRED database. Subsequently, Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were performed to analyze quercetin targeting GDM-related genes. Furthermore, the signal pathway between GDM and quercetin was performed. Finally, Autodock vina software was utilized for molecular docking simulation while PyMOL and Discovery Studio were applied to visually display the 3D and 2D structure between GDM and quercetin. A total of 296 genes relevant to GDM with intersections in the three databases were screened by Venn diagram intersections. GO and KEGG analysis indicated that GDM was involved in multiple signaling pathways. Then, 42 targets of quercetin on GDM were screened, including 9 core targets. 2 major signaling pathways played critical roles in the treatment of GDM with quercetin. The molecular docking data showed that the molecular docking affinity of quercetin with 9 core genes was less than −5 Kcal/mol, which suggested that the binding between molecules was relatively stable. Quercetin in the treatment of GDM has the characteristics of multi-target and multi-pathway.

Letters in Drug Design & DiscoveryVol. 22(1)
Children’s Hospital of Fudan University Xiamen Branch (CN), Xiamen Maternal and Child Health Hospital (CN)
Openalex Percentile: Top 28%
Nuclear Receptors and Signaling
0.91
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Exploration of the mechanism of quercetin against GDM based on network pharmacology and molecular docking — Y.K. Hong, Jinghai Chen, et al. · Letters in Drug Design & Discovery (2025) | TGRS Research Map | TGRS