Molecular Dynamics Simulation of Self-Assembly and Tensile Deformation of Silk-Mimetic Polymers

Silk is a natural biopolymer with outstanding mechanical properties due to its nanocomposite microstructure of crystalline β-sheets in an amorphous matrix. However, there remains a lack of understanding of the relationship between amino acid sequence, supramolecular structure formation, and mechanical properties. In this work, we developed a reactive coarse-grained molecular dynamics model to simulate the self-assembly, tensile deformation, and fracture of a segmented copolymer based on the repetitive core domain of spider dragline spidroins. We find that the β-sheet nanocrystal content is determined by the length ratio of β-sheet to non-β-sheet segments. We reveal that the chain length affects the chain-to-chain network connectivity between the nanocrystals. High nanocrystal content and high connectivity improve the strength and stiffness at the cost of extensibility. Toughness does not continue to increase past a threshold β-sheet-to-non-sheet segment ratio. Our findings provide important insights to guide the rational molecular design of silk-mimetic materials.

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Publication Details

Journal
Biomacromolecules
Published
2025-04-21
DOI
https://doi.org/10.1021/acs.biomac.4c01623
Primary Topic
Silk-based biomaterials and applications
Type
article
Field-Weighted Citation Impact
0.00

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article

Molecular Dynamics Simulation of Self-Assembly and Tensile Deformation of Silk-Mimetic Polymers

Jeong-Ae Kim, Yunfeng Shi, R. Helen Zha, Yanming Zhang et al.
Biomacromolecules
Silk-based biomaterials and applications
article

Molecular Dynamics Simulation of Self-Assembly and Tensile Deformation of Silk-Mimetic Polymers

Jeong-Ae Kim, Yunfeng Shi, R. Helen Zha, Yanming Zhang, Shweta Burgula
article en

Abstract

Silk is a natural biopolymer with outstanding mechanical properties due to its nanocomposite microstructure of crystalline β-sheets in an amorphous matrix. However, there remains a lack of understanding of the relationship between amino acid sequence, supramolecular structure formation, and mechanical properties. In this work, we developed a reactive coarse-grained molecular dynamics model to simulate the self-assembly, tensile deformation, and fracture of a segmented copolymer based on the repetitive core domain of spider dragline spidroins. We find that the β-sheet nanocrystal content is determined by the length ratio of β-sheet to non-β-sheet segments. We reveal that the chain length affects the chain-to-chain network connectivity between the nanocrystals. High nanocrystal content and high connectivity improve the strength and stiffness at the cost of extensibility. Toughness does not continue to increase past a threshold β-sheet-to-non-sheet segment ratio. Our findings provide important insights to guide the rational molecular design of silk-mimetic materials.

BiomacromoleculesVol. 26(5)
Rensselaer Polytechnic Institute (US), Center for Interdisciplinary Studies (IN)
Division of Molecular and Cellular Biosciences
Openalex Percentile: Top 95%
Silk-based biomaterials and applications
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Molecular Dynamics Simulation of Self-Assembly and Tensile Deformation of Silk-Mimetic Polymers — Jeong-Ae Kim, Yunfeng Shi, et al. · Biomacromolecules (2025) | TGRS Research Map | TGRS