A comprehensive and easy-to-use multi-domain multi-task medical imaging meta-dataset

While the field of medical image analysis has undergone a transformative shift with the integration of machine learning techniques, the main challenge of these techniques is often the scarcity of large, diverse, and well-annotated datasets. Medical images vary in format, size, and other parameters and therefore require extensive preprocessing and standardization, for usage in machine learning. Addressing these challenges, we introduce the Medical Imaging Meta-Dataset (MedIMeta), a novel multi-domain, multi-task meta-dataset. MedIMeta contains 19 medical imaging datasets spanning 10 different domains and encompassing 54 distinct medical tasks, all of which are standardized to the same format and readily usable in PyTorch or other ML frameworks. We perform a technical validation of MedIMeta, demonstrating its utility through fully supervised and cross-domain few-shot learning baselines.

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Publication Details

Journal
Scientific Data
Published
2025-04-19
DOI
https://doi.org/10.1038/s41597-025-04866-4
Citations
5
Primary Topic
Radiomics and Machine Learning in Medical Imaging
Type
article
Field-Weighted Citation Impact
6.80

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article

A comprehensive and easy-to-use multi-domain multi-task medical imaging meta-dataset

Christian F. Baumgartner, Stefano Woerner, Arthur Jaques
5 citations
Scientific Data
Radiomics and Machine Learning in Medical Imaging
6.80
article

A comprehensive and easy-to-use multi-domain multi-task medical imaging meta-dataset

Christian F. Baumgartner, Stefano Woerner, Arthur Jaques
article en
5 citations

Abstract

While the field of medical image analysis has undergone a transformative shift with the integration of machine learning techniques, the main challenge of these techniques is often the scarcity of large, diverse, and well-annotated datasets. Medical images vary in format, size, and other parameters and therefore require extensive preprocessing and standardization, for usage in machine learning. Addressing these challenges, we introduce the Medical Imaging Meta-Dataset (MedIMeta), a novel multi-domain, multi-task meta-dataset. MedIMeta contains 19 medical imaging datasets spanning 10 different domains and encompassing 54 distinct medical tasks, all of which are standardized to the same format and readily usable in PyTorch or other ML frameworks. We perform a technical validation of MedIMeta, demonstrating its utility through fully supervised and cross-domain few-shot learning baselines.

Scientific DataVol. 12(1)
University of Lucerne (CH), Bernstein Center for Computational Neuroscience Tübingen (DE), University of Tübingen (DE)
International Max Planck Research School for Environmental, Cellular and Molecular Microbiology, Deutsche Forschungsgemeinschaft, International Max Planck Research School for Advanced Methods in Process and Systems Engineering
Quality Education
Openalex Percentile: Top 3%
Radiomics and Machine Learning in Medical Imaging
6.80
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