Exploring and expanding the natural chemical space of bacterial diterpenes

Terpenoids are the largest family of natural products but relatively rare in bacteria. Genome mining reveals widespread prevalence of terpene synthases, the enzymes responsible for constructing the hydrocarbon skeletons, in bacteria. Here, we show that 125 (37%) of 334 terpene synthases from 8 phyla, 17 classes, and 83 genera of bacteria are active as diterpene synthases. Isolation and structural elucidation of 28 diterpenes from 31 terpene synthases reveal three previously unreported terpene skeletons, skeletons of natural products from other organisms with unknown biosynthetic pathways, diterpenes that are known in other organisms but to the best of our knowledge not previously seen in bacteria, or new structural and stereochemical isomers of diterpenes. We also identify type I diterpene synthases from myxobacteria and cyanobacteria. This study will help to discover new natural products, advance studies in terpenoid biosynthesis and enzymology, and provide model systems to probe the ecological roles of terpenes.

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Publication Details

Journal
Nature Communications
Published
2025-04-19
DOI
https://doi.org/10.1038/s41467-025-57145-6
Citations
19
Primary Topic
Plant biochemistry and biosynthesis
Type
article
Field-Weighted Citation Impact
15.31

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article

Exploring and expanding the natural chemical space of bacterial diterpenes

Caitlin A. McCadden, Jordan Nafie, Xiuting Wei, Baofu Xu et al.
19 citations
Nature Communications
Plant biochemistry and biosynthesis
15.31
article

Exploring and expanding the natural chemical space of bacterial diterpenes

Caitlin A. McCadden, Jordan Nafie, Xiuting Wei, Baofu Xu, Jeffrey D. Rudolf, Wenbo Ning, Zining Li, Tyler A. Alsup, Daniel G. Icenhour, Melvin Osei Opoku, Diana P. Łomowska-Keehner, Glen Gillia, Tracy Qu
article en
19 citations

Abstract

Terpenoids are the largest family of natural products but relatively rare in bacteria. Genome mining reveals widespread prevalence of terpene synthases, the enzymes responsible for constructing the hydrocarbon skeletons, in bacteria. Here, we show that 125 (37%) of 334 terpene synthases from 8 phyla, 17 classes, and 83 genera of bacteria are active as diterpene synthases. Isolation and structural elucidation of 28 diterpenes from 31 terpene synthases reveal three previously unreported terpene skeletons, skeletons of natural products from other organisms with unknown biosynthetic pathways, diterpenes that are known in other organisms but to the best of our knowledge not previously seen in bacteria, or new structural and stereochemical isomers of diterpenes. We also identify type I diterpene synthases from myxobacteria and cyanobacteria. This study will help to discover new natural products, advance studies in terpenoid biosynthesis and enzymology, and provide model systems to probe the ecological roles of terpenes.

Nature CommunicationsVol. 16(1)
Sichuan University (CN), University of Florida (US), Shanghai Institute of Materia Medica (CN), Jupiter Medical Center (US), Florida College (US)
National Science Foundation, U.S. Department of Energy, Joint Genome Institute, National Institutes of Health, Office of Science
Openalex Percentile: Top 1%
Plant biochemistry and biosynthesis
15.31
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