PolyA-Bridged Capture Probe Architecture Enables High-Efficiency DNA Hybridization for Multiplex Biosensing Applications

DNA target-probe hybridization is a critical recognition and combination process for establishing high-performance biosensors. However, in conventional self-assembly strategies, surface-anchored capture probes exhibit heterogeneous molecular conformations and limit the kinetics of DNA hybridization at the interface. As a result, the response speed and practicability of electrochemical biosensors are quite limited, especially in real samples. Interfacial regulation of the molecular conformation using artificial DNA nanostructures has been widely recognized as a promising strategy to improve the accessibility and activity of capture probes. This study introduces a significantly simplified molecular regulatory structure on the surface of the gold electrode consisting of a probe-polyA-probe (PAP) sequence and a capture probe (CP). The PAP sequence has a central polyA fragment anchoring to the gold electrode and two flanking probes for hybridization with the two ends of the capture probe, forming a bridged CP (BCP). Upon dual-terminal hybridization with PAP, the capture probe underwent structural linearization through opposing directional extension, thereby markedly enhancing the steric accessibility and subsequent hybridization efficiency. By establishing a BCP biosensor, we achieved rapid and sensitive detection of DNA hybridization from 1 fM to 1 nM. More importantly, the platform demonstrated valuable versatility in the construction of both a gap hybridization biosensor for microRNA and a DNAzyme biosensor for Pb<sup>2+</sup>. The BCP biosensor exhibited exceptional biorecognition capability, achieving rapid DNA hybridization kinetics in only 3 min and a remarkable hybridization efficiency of 95.56%. Based on its high sensitivity, operational simplicity, and broad applicability, our BCP biosensor has shown an avenue for the development of novel electrochemical biosensors for molecular diagnostics and environmental monitoring.

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Publication Details

Journal
Analytical Chemistry
Published
2025-04-18
DOI
https://doi.org/10.1021/acs.analchem.5c01752
Citations
3
Primary Topic
Advanced biosensing and bioanalysis techniques
Type
article
Field-Weighted Citation Impact
2.42

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article

PolyA-Bridged Capture Probe Architecture Enables High-Efficiency DNA Hybridization for Multiplex Biosensing Applications

Yinbo Huo, Jiaqi Yang, Juan Yan, Ruiyan Guo et al.
3 citations
Analytical Chemistry
Advanced biosensing and bioanalysis techniques
2.42
article

PolyA-Bridged Capture Probe Architecture Enables High-Efficiency DNA Hybridization for Multiplex Biosensing Applications

Yinbo Huo, Jiaqi Yang, Juan Yan, Ruiyan Guo, Haoran Zhao, Lanying Li, Lele Wang, Gang Liu, Yanli Wen
article en
3 citations

Abstract

DNA target-probe hybridization is a critical recognition and combination process for establishing high-performance biosensors. However, in conventional self-assembly strategies, surface-anchored capture probes exhibit heterogeneous molecular conformations and limit the kinetics of DNA hybridization at the interface. As a result, the response speed and practicability of electrochemical biosensors are quite limited, especially in real samples. Interfacial regulation of the molecular conformation using artificial DNA nanostructures has been widely recognized as a promising strategy to improve the accessibility and activity of capture probes. This study introduces a significantly simplified molecular regulatory structure on the surface of the gold electrode consisting of a probe-polyA-probe (PAP) sequence and a capture probe (CP). The PAP sequence has a central polyA fragment anchoring to the gold electrode and two flanking probes for hybridization with the two ends of the capture probe, forming a bridged CP (BCP). Upon dual-terminal hybridization with PAP, the capture probe underwent structural linearization through opposing directional extension, thereby markedly enhancing the steric accessibility and subsequent hybridization efficiency. By establishing a BCP biosensor, we achieved rapid and sensitive detection of DNA hybridization from 1 fM to 1 nM. More importantly, the platform demonstrated valuable versatility in the construction of both a gap hybridization biosensor for microRNA and a DNAzyme biosensor for Pb<sup>2+</sup>. The BCP biosensor exhibited exceptional biorecognition capability, achieving rapid DNA hybridization kinetics in only 3 min and a remarkable hybridization efficiency of 95.56%. Based on its high sensitivity, operational simplicity, and broad applicability, our BCP biosensor has shown an avenue for the development of novel electrochemical biosensors for molecular diagnostics and environmental monitoring.

Analytical ChemistryVol. 97(16)
Shanghai Institute of Measurement and Testing Technology (CN), Ministère de l'Agriculture et de la Souveraineté alimentaire (FR), Shanghai Ocean University (CN)
National Natural Science Foundation of China, Science and Technology Commission of Shanghai Municipality
Affordable and clean energy
Openalex Percentile: Top 12%
Advanced biosensing and bioanalysis techniques
2.42
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