Deciphering the <i>in silico</i> molecular mechanism of coumestrol activity for uterine fibroids remedy: a promising estrogenic target drug candidate

Uterine fibroids (UF) are reproductive conditions that occur as tumours in the womb. It is a gynecological outgrowth of diverse sizes often allied with infertility risks that might require surgery to reduce the complication in the worst-case scenario in women. Recent studies have uncovered that estrogen can induce and facilitate other target pathways' action on target cells for UF's pathogenesis, among the targets probed for pharmaceutical intervention. This study screens the interaction effects of 32 phytochemicals from indigenous and adopted potent Chinese plants and herbs; Chamomile, Pomegranate, Red clover, Cinnamomum, and Date palm, against estrogen receptor alpha (ESRα) to serve for anti-UF drug candidates using <i>in silico</i> tools through the molecular mechanisms. The interaction identifies coumestrol as the best-docked candidate (-9.6 kcal/mol) with a correlation to the binding free energy (-30.487 kcal/mol) as compared to the standard drug tamoxifen (-9.3 kcal/mol; -46.928 kcal/mol). The downstream post-docking evaluation reveals coumestrol to have excellent pharmacokinetics, drug-likeness, leadlikeness (no violation), less toxic (LD50; 2991 mg/kg), and highly interactive with ESRα. Coumestrol was top-ranked for ESRα (1QKU) target by PharmMapper among 300 human protein targets, with a z-score of 1.19368. The density functional theory (DFT) and dynamic simulation of 200 ns reveal regions of coumestrol structure and its complex that contribute to the chemical reactivity, stability, flexibility, and compactness of druggability. Ultimately, coumestrol emerged as a potential candidate suitable for anti-UF management, therefore future direction for its application should be on the design and synthesis of new structural derivatives for further <i>in silico</i>, <i>in vitro</i>, and <i>in vivo</i> studies.

Authors

Institutions

Publication Details

Journal
Journal of Biomolecular Structure and Dynamics
Published
2025-04-17
DOI
https://doi.org/10.1080/07391102.2025.2487191
Citations
7
Primary Topic
Estrogen and related hormone effects
Type
article
Field-Weighted Citation Impact
12.72
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Deciphering the in silico molecular mechanism of coumestrol activity for uterine fibroids remedy: a promising estrogenic target drug candidate

Aqsa Munir, Odunayo Anthonia Taiwo, Samir Chtita, Tope Abraham Ibisanmi et al.
7 citations
Journal of Biomolecular Structure and Dynamics
Estrogen and related hormone effects
12.72
article

Deciphering the in silico molecular mechanism of coumestrol activity for uterine fibroids remedy: a promising estrogenic target drug candidate

Aqsa Munir, Odunayo Anthonia Taiwo, Samir Chtita, Tope Abraham Ibisanmi, Olachi Lilian Osuagwu, Christopher Busayo Olowosoke, Oluwafemi Adeleke Ojo, Meriem Khedraoui, Chioma J. Eze, Salimat O. Sofela, Valerie Onyia Babatope
article en
7 citations

Abstract

Uterine fibroids (UF) are reproductive conditions that occur as tumours in the womb. It is a gynecological outgrowth of diverse sizes often allied with infertility risks that might require surgery to reduce the complication in the worst-case scenario in women. Recent studies have uncovered that estrogen can induce and facilitate other target pathways' action on target cells for UF's pathogenesis, among the targets probed for pharmaceutical intervention. This study screens the interaction effects of 32 phytochemicals from indigenous and adopted potent Chinese plants and herbs; Chamomile, Pomegranate, Red clover, Cinnamomum, and Date palm, against estrogen receptor alpha (ESRα) to serve for anti-UF drug candidates using <i>in silico</i> tools through the molecular mechanisms. The interaction identifies coumestrol as the best-docked candidate (-9.6 kcal/mol) with a correlation to the binding free energy (-30.487 kcal/mol) as compared to the standard drug tamoxifen (-9.3 kcal/mol; -46.928 kcal/mol). The downstream post-docking evaluation reveals coumestrol to have excellent pharmacokinetics, drug-likeness, leadlikeness (no violation), less toxic (LD50; 2991 mg/kg), and highly interactive with ESRα. Coumestrol was top-ranked for ESRα (1QKU) target by PharmMapper among 300 human protein targets, with a z-score of 1.19368. The density functional theory (DFT) and dynamic simulation of 200 ns reveal regions of coumestrol structure and its complex that contribute to the chemical reactivity, stability, flexibility, and compactness of druggability. Ultimately, coumestrol emerged as a potential candidate suitable for anti-UF management, therefore future direction for its application should be on the design and synthesis of new structural derivatives for further <i>in silico</i>, <i>in vitro</i>, and <i>in vivo</i> studies.

Journal of Biomolecular Structure and DynamicsVol. 44(5)
Federal University of Technology Owerri (NG), Federal University of Technology (NG), University of Lagos (NG), Bowen University (NG), Institute of Molecular Sciences and Bioinformatics (PK), The Women University Multan (PK), Institute of Bioinformatics (IN), Toronto Metropolitan University (CA), University of Hassan II Casablanca (MA)
Zero hunger
Openalex Percentile: Top 1%
Estrogen and related hormone effects
12.72
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.