First-Principles Modeling of the Electronic and Optical Properties of Biogenic Crystals: The Case of Anhydrous Guanine

Biogenic crystals and, in particular, guanine crystals are crucial for certain organisms in manipulating light. A systematic study of the properties of their different crystalline forms and the effect of the computational method considered is, however, currently lacking. In this study, we present a density functional theory (DFT)-based computational investigation using local basis set formalisms of the key properties of three crystalline forms of anhydrous guanine (AG). Their structural, electronic, vibrational Infrared, Raman, and refractive properties have been investigated. In addition, based on the computed data, we present for the first time a fourth AG form. In most cases, we find the computed data to be in very good to excellent agreement with the available experimental data. In particular, all AG forms are found to be thermodynamically accessible with differences in their computed lattice energies lower than ∼1 kcal/mol. However, the previously proposed orthorhombic γ form is found to systematically correspond to a second-order saddle point on the potential energy surface with all DFT models considered. On the other hand, the proposed γ′ form is a true minimum and displays a characteristic Raman signature already obtained experimentally for the β form and optical properties close to those provided by the other stable polymorphs. This indicates that γ′ might also contribute to AG polymorphism and offer an additional possibility for certain organisms to generate specific optical effects.

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Publication Details

Journal
The Journal of Physical Chemistry C
Published
2025-04-17
DOI
https://doi.org/10.1021/acs.jpcc.5c01070
Primary Topic
Quantum Dots Synthesis And Properties
Type
article
Field-Weighted Citation Impact
0.00

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article

First-Principles Modeling of the Electronic and Optical Properties of Biogenic Crystals: The Case of Anhydrous Guanine

Carlo Adamo, Frédèric Labat, Parfaite Senou
The Journal of Physical Chemistry C
Quantum Dots Synthesis And Properties
article

First-Principles Modeling of the Electronic and Optical Properties of Biogenic Crystals: The Case of Anhydrous Guanine

Carlo Adamo, Frédèric Labat, Parfaite Senou
article en

Abstract

Biogenic crystals and, in particular, guanine crystals are crucial for certain organisms in manipulating light. A systematic study of the properties of their different crystalline forms and the effect of the computational method considered is, however, currently lacking. In this study, we present a density functional theory (DFT)-based computational investigation using local basis set formalisms of the key properties of three crystalline forms of anhydrous guanine (AG). Their structural, electronic, vibrational Infrared, Raman, and refractive properties have been investigated. In addition, based on the computed data, we present for the first time a fourth AG form. In most cases, we find the computed data to be in very good to excellent agreement with the available experimental data. In particular, all AG forms are found to be thermodynamically accessible with differences in their computed lattice energies lower than ∼1 kcal/mol. However, the previously proposed orthorhombic γ form is found to systematically correspond to a second-order saddle point on the potential energy surface with all DFT models considered. On the other hand, the proposed γ′ form is a true minimum and displays a characteristic Raman signature already obtained experimentally for the β form and optical properties close to those provided by the other stable polymorphs. This indicates that γ′ might also contribute to AG polymorphism and offer an additional possibility for certain organisms to generate specific optical effects.

The Journal of Physical Chemistry CVol. 129(17)
Centre National de la Recherche Scientifique (FR), Chimie ParisTech - PSL (FR), Université Paris Sciences et Lettres (FR), Health & Life (Taiwan) (TW)
Grand Équipement National De Calcul Intensif, European Research Council
Clean water and sanitation
Openalex Percentile: Top 95%
Quantum Dots Synthesis And Properties
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