TCMSF: A Construction Framework of Traditional Chinese Medicine Syndrome Ancient Book Knowledge Graph

Syndrome is a unique and crucial concept in traditional Chinese medicine (TCM). However, much of the syndrome knowledge lacks systematic organization and correlation, and current information technologies are unsuitable for TCM ancient texts.We aimed to develop a knowledge graph that presents this knowledge in a more orderly, structured, and semantically oriented manner, providing a foundation for computer-aided diagnosis and treatment.We developed a construction framework of TCM syndrome knowledge from ancient books, using a pretrained model and rules (TCMSF). We conducted fine-tuning training on Enhanced Representation through Knowledge Integration (ERNIE), Bidirectional Encoder Representation from Transformers pretrained language models, and chatGLM3-6b large language models for named entity recognition (NER) tasks. Furthermore, we employed the progressive entity relationship extraction method based on the dual pattern feature combination to extract and standardize entities and relationships between entities in these books.We selected Yin deficiency syndrome as a case study and constructed a model layer suitable for the expression of knowledge in these books. Compared with multiple NER methods, the combination of ERNIE and Conditional Random Fields performs the best. By utilizing this combination, we completed the entity extraction of Yin deficiency syndrome, achieving an average F1 value of 0.77. The relationship extraction method we proposed reduces the number of incorrectly connected relationships compared with fully connected pattern layers. We successfully constructed a knowledge graph of ancient books on Yin deficiency syndrome, including over 120,000 entities and over 1.18 million relationships.We developed TCMSF in line with the knowledge characteristics of ancient TCM books and improved the accuracy of knowledge graph construction.

Authors

Institutions

Publication Details

Journal
Methods of Information in Medicine
Published
2024-12-01
DOI
https://doi.org/10.1055/a-2590-6348
Primary Topic
Traditional Chinese Medicine Studies
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

TCMSF: A Construction Framework of Traditional Chinese Medicine Syndrome Ancient Book Knowledge Graph

Jing’ai Wang, Jialun Wang, Lin Tong, Qikai Niu et al.
Methods of Information in Medicine
Traditional Chinese Medicine Studies
article

TCMSF: A Construction Framework of Traditional Chinese Medicine Syndrome Ancient Book Knowledge Graph

Jing’ai Wang, Jialun Wang, Lin Tong, Qikai Niu, Ziling Zeng, Sihong Liu, Siqi Zhang, Wenjing Zong, Wei Zhang, Bing Li, Lei Zhang, Huamin Zhang, Siwei Tian
article en

Abstract

Syndrome is a unique and crucial concept in traditional Chinese medicine (TCM). However, much of the syndrome knowledge lacks systematic organization and correlation, and current information technologies are unsuitable for TCM ancient texts.We aimed to develop a knowledge graph that presents this knowledge in a more orderly, structured, and semantically oriented manner, providing a foundation for computer-aided diagnosis and treatment.We developed a construction framework of TCM syndrome knowledge from ancient books, using a pretrained model and rules (TCMSF). We conducted fine-tuning training on Enhanced Representation through Knowledge Integration (ERNIE), Bidirectional Encoder Representation from Transformers pretrained language models, and chatGLM3-6b large language models for named entity recognition (NER) tasks. Furthermore, we employed the progressive entity relationship extraction method based on the dual pattern feature combination to extract and standardize entities and relationships between entities in these books.We selected Yin deficiency syndrome as a case study and constructed a model layer suitable for the expression of knowledge in these books. Compared with multiple NER methods, the combination of ERNIE and Conditional Random Fields performs the best. By utilizing this combination, we completed the entity extraction of Yin deficiency syndrome, achieving an average F1 value of 0.77. The relationship extraction method we proposed reduces the number of incorrectly connected relationships compared with fully connected pattern layers. We successfully constructed a knowledge graph of ancient books on Yin deficiency syndrome, including over 120,000 entities and over 1.18 million relationships.We developed TCMSF in line with the knowledge characteristics of ancient TCM books and improved the accuracy of knowledge graph construction.

Methods of Information in MedicineVol. 63(05/06)
Chinese Academy of Medical Sciences & Peking Union Medical College (CN), China Academy of Chinese Medical Sciences (CN)
National Key Research and Development Program of China
Quality Education
Openalex Percentile: Top 50%
Traditional Chinese Medicine Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.